Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste6g02915 atgaatttctctgaccatattccttcctttttgatgtcaccgccgtcattctctacagacacagatgccattgaagtgaggcttcaattcccaatgaacaacaacgaatcattggagccacattcaccacaagatcaacccccttcgttcaagagggcaaggatttctgataacagccactccaatgcaatggcatgccctccaagaatgagtcagcacccaacgcttaacaaaggaacgagccacattttcttcaagacccgcatttgtgccaagttcaaagctggtgcttgtaggaacggtgagaattgcaactttgcacatggggttgaagatatgaggcagccgccgccaaattggcaagaacttgtagggttgcggaatgatgaacggcaaccggccggtaattgggatgatgaccagaaaataatacacaagatgaagttgtgcaaaaagtattacaatggggaggaatgcccctatggtgataagtgtagttttcttcatgaagaccctgctaggttcagggatgattctggaaggttcagggagaccacagccataagcattggaaccaatggatcccccaagtcctatggacatggtgatgcctctaataatgtagaaagtaatagggctgtgaacactggcttaaatgtttcccggggtattgttaagtctacttattggaagactaaactgtgcatcaaatttgatataactggccactgcccctttggggatgactgtcactttgctcatgggcaagcagagttacaatttcctggtggacgcgctgaagtagaaactgcaggtgctattccaatttcaactaaggctgccattccaaccttaccaagaactgcatcaatttcttctaatgatgcaactcctagcgacagagcaagtgtacctccagcaaatgaagaggagcagggtaagaagtatttactgaagtggaaaggacacaggaagatcaaccgaatttatggtgattggcttgatgatttacctctggttcacaacttgccaggtagagtggggacctga 1050 0.0 MNFSDHIPSFLMSPPSFSTDTDAIEVRLQFPMNNNESLEPHSPQDQPPSFKRARISDNSHSNAMACPPRMSQHPTLNKGTSHIFFKTRICAKFKAGACRNGENCNFAHGVEDMRQPPPNWQELVGLRNDERQPAGNWDDDQKIIHKMKLCKKYYNGEECPYGDKCSFLHEDPARFRDDSGRFRETTAISIGTNGSPKSYGHGDASNNVESNRAVNTGLNVSRGIVKSTYWKTKLCIKFDITGHCPFGDDCHFAHGQAELQFPGGRAEVETAGAIPISTKAAIPTLPRTASISSNDATPSDRASVPPANEEEQGKKYLLKWKGHRKINRIYGDWLDDLPLVHNLPGRVGT 349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste6g02915 349 MobiDBLite consensus disorder prediction 34 73 - -
Pste6g02915 349 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 85 109 IPR000571 GO:0046872
Pste6g02915 349 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 230 256 IPR000571 GO:0046872
Pste6g02915 349 ProSiteProfiles Zinc finger C3H1-type profile. 84 111 IPR000571 GO:0046872
Pste6g02915 349 MobiDBLite consensus disorder prediction 285 301 - -
Pste6g02915 349 FunFam Zinc finger CCCH domain-containing protein 39 141 173 - -
Pste6g02915 349 PANTHER CCCH ZINC FINGER/TIS11-RELATED 31 174 IPR045877 GO:0003729
Pste6g02915 349 ProSiteProfiles Zinc finger C3H1-type profile. 229 257 IPR000571 GO:0046872
Pste6g02915 349 ProSiteProfiles Zinc finger C3H1-type profile. 144 172 IPR000571 GO:0046872
Pste6g02915 349 FunFam Zinc finger CCCH domain-containing protein 79 115 - -
Pste6g02915 349 Pfam CCCH-type zinc finger 148 169 IPR041367 -
Pste6g02915 349 Gene3D - 141 173 - -
Pste6g02915 349 Gene3D - 78 115 - -
Pste6g02915 349 Gene3D - 224 261 - -
Pste6g02915 349 SUPERFAMILY CCCH zinc finger 144 171 IPR036855 GO:0046872
Pste6g02915 349 SUPERFAMILY CCCH zinc finger 228 260 IPR036855 GO:0046872
Pste6g02915 349 SUPERFAMILY CCCH zinc finger 82 115 IPR036855 GO:0046872
Pste6g02915 349 FunFam Zinc finger CCCH domain-containing protein 224 261 - -
Pste6g02915 349 SMART c3hfinal6 229 256 IPR000571 GO:0046872
Pste6g02915 349 SMART c3hfinal6 84 110 IPR000571 GO:0046872
Pste6g02915 349 SMART c3hfinal6 144 171 IPR000571 GO:0046872
Pste6g02915 349 MobiDBLite consensus disorder prediction 285 310 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste6g02915 Pste-Chr6 16956609 16959099 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste6g02915 86 192 C3H Transcription Factor Family AT1G68200 25.000 8.30e-06 45.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Pste6g02915 zf-CCCH 1.8e-10 CL0537
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste6g02915 6 16956609 16959099 Pste6g02915 6 16956609 16959099 ECH