LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pste6g02905	atgaacggcacagcaagtagagatgaacaggactacgacagcagctcgtcctcaatgacggtgccggagtcgaggcggagctggatgagcaacatgagcttcgggagccgggggcggcggagctgggtgtcggtgtggtcctcgagcgcggaggtgaagccgcacaaggcgaacgaggctgcatgggaggcgatgaggcggctccggcgggagaaggggcaggtggggctggacgacttccggctgctgcggcgggtggggagcggggacatcgggaacgtgtacctctgccagataaggaaccccgttgtgcagtgcttttatgccatgaaagtggtggacagagaggctcttgccataaggaagaagctccagagggccgagatggagaaggagattctctccatgcttgaccaccccttcttgcctactttgtacgccgagtttgacgcttctcattactcttgcttcctcatggagttctgccccggtggagacttgtactctgcacgccaacgccagccatcgaagcgcttttccatcacttccactaagttttatgcagctgagacgctgttggcattagagtatctacacatgatggggatagtgtacagggatttgaagccagagaatgtgctagtgagggaggatgggcacattatgctttcggattttgatctatcgctgaaatgcgacgttgttccaaagctgttaaggagtaagacgagattggaacgaagcatcaagagtacaaggagttctgcaccggcctgcactgcccccatgcagcctgtgctgtcatgtttcttgtcgtcaagcaagaaaaagaaagctaccgtgacgacagttattagggaaaatgttgaggtggaagaacatgatccggagctagtggctgagcccatcgatgccaagtccaagtcatttgtggggacacacgagtacttggcgccagaggtcattcttgggcaaggacacgggagtgctgtggattggtggacgtttggggtcttcttgtatgagatgttatatggtataactcccttcaaaggtgaaaataatgagaaaactctcgtcaacattttgaagcaaccgttggcttttcctagggttgcacttagcagcagcaaggagtttgaagagatggtcaaagttcaagaccttataagtaatcttttggtgaagaatcccaataagagaattggcagccgcatgggttctgttgagatcaaaagacatgacttcttcaagggtgtaaattgggccttaattagatcagttaggccccctgaggtccctactgatatcaacaaaattaggagtagggttttgccaccaaaactaagcaaaacagacagggagcagccttatcagcttagaactcatcattttgaatacttctaa	1407	0.0	MNGTASRDEQDYDSSSSSMTVPESRRSWMSNMSFGSRGRRSWVSVWSSSAEVKPHKANEAAWEAMRRLRREKGQVGLDDFRLLRRVGSGDIGNVYLCQIRNPVVQCFYAMKVVDREALAIRKKLQRAEMEKEILSMLDHPFLPTLYAEFDASHYSCFLMEFCPGGDLYSARQRQPSKRFSITSTKFYAAETLLALEYLHMMGIVYRDLKPENVLVREDGHIMLSDFDLSLKCDVVPKLLRSKTRLERSIKSTRSSAPACTAPMQPVLSCFLSSSKKKKATVTTVIRENVEVEEHDPELVAEPIDAKSKSFVGTHEYLAPEVILGQGHGSAVDWWTFGVFLYEMLYGITPFKGENNEKTLVNILKQPLAFPRVALSSSKEFEEMVKVQDLISNLLVKNPNKRIGSRMGSVEIKRHDFFKGVNWALIRSVRPPEVPTDINKIRSRVLPPKLSKTDREQPYQLRTHHFEYF	468

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pste6g02905	468	ProSiteProfiles	Protein kinase domain profile.	80	417	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pste6g02905	468	Pfam	Protein kinase domain	306	417	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pste6g02905	468	Pfam	Protein kinase domain	81	232	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pste6g02905	468	FunFam	serine/threonine-protein kinase D6PK-like	305	435	-	-
	Pste6g02905	468	SUPERFAMILY	Protein kinase-like (PK-like)	61	440	IPR011009	-
	Pste6g02905	468	Gene3D	Phosphorylase Kinase; domain 1	77	161	-	-
	Pste6g02905	468	Gene3D	Transferase(Phosphotransferase) domain 1	304	435	-	-
	Pste6g02905	468	CDD	STKc_phototropin_like	78	435	-	-
	Pste6g02905	468	MobiDBLite	consensus disorder prediction	1	24	-	-
	Pste6g02905	468	FunFam	protein kinase PINOID 2	78	161	-	-
	Pste6g02905	468	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	203	215	IPR008271	GO:0004672\|GO:0006468
	Pste6g02905	468	SMART	serkin_6	80	417	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pste6g02905	468	FunFam	protein kinase PINOID	162	230	-	-
	Pste6g02905	468	Gene3D	Transferase(Phosphotransferase) domain 1	162	231	-	-
	Pste6g02905	468	PANTHER	FLIPPASE KINASE 1-RELATED	19	437	-	-
	Pste6g02905	468	Coils	Coil	110	130	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pste6g02905	Pste-Chr6	16843659	16845435	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pste6g02905	8	468	AGC Kinase Gene Family	AT2G26700	57.774	0.0	570

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	AGC_RSK-2	Pste6g02905		Pkinase	9.3e-32	CL0016

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Pste6g02905	6	16843659	16845435	Pste6g02905	6	16843659	16845435	ECH
	Pste6g02905	6	16843659	16845435	Pste2g00214	2	1169912	1173176	PCT