LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pste6g02895	atggaggacagaaaggccaacacaatctgcgttatatcagtgattgcagtgatcgttgtgataatcgttgctcgtgtttccttgaagctttcacgtgggttcttcctcattttcggcgccgcaattgcagtgatcctggctgtcttttcttgtgcattcataaggcagcgttacaaccgcaggaggaggttgttggaatcacagttgaagacagaagggagagagcttcgaatagagtacagtttcttaagaaaagttgcaggggttcccacaaagtatcgttttaaggagcttgaagaagcaacggatggttttcaagcactgttgggaagagggtcctcagcttcggtgttcaaaggcattctcagcgacggaacttctgttgcggtgaaacgaatcgatggagaggagcgtggagagaaggagttcagatcagaagttgcagccatggctagtgtgcaccatgtcaaccttgtacgtttgtttggttattgtaactctcccacggcgccgaggtaccttgtttatgagtatatcccaaatgggtcgttggattgttggatatttccctcaaaggagaatcatcgacgtaggggtgggtgtttggcttggaacttgaggtataaggtagctattgatgttgccaaggggttgtcttatcttcaccatgattgtaggaggagggttttgcaccttgatgtgaagccggagaatatactattggatgagaattacaaggctcttgtttcggattttggtctctcaacgcttgttgggaaggatgtgagtcaggttatgacaacaatgagaggaacaagagggtacttggctcctgaatggcttttggaaagaggggtgtcagaaaaaactgatatttacagttatgggatggttctgttggagataatgggagggagaaggaatgtgtcgagggtggaggatccgagggataggagtaagaaaaagtgggagttctttcccaagatagtgaatgagaaagtgagggaggggaagttaatggagatagtggatcataggttggtggagagtgggggggttgaggagagtgaggtcattagattggtgtatattgctttgtggtgcatacaagagaagccaaggttgaggcctagcatggcacaagtggtggatatgcttgaggggcgtgtgagggtggatgagccacctggttccagaatgattcttgttgatttactggctgttgatgaagaccctgcagatcatcgaaatcttgcaaggttgttgaccactgtctccagcaatctcgattgtacttctacttactccttaggaaccgcaaacactattttatctggcaggtag	1344	0.0	MEDRKANTICVISVIAVIVVIIVARVSLKLSRGFFLIFGAAIAVILAVFSCAFIRQRYNRRRRLLESQLKTEGRELRIEYSFLRKVAGVPTKYRFKELEEATDGFQALLGRGSSASVFKGILSDGTSVAVKRIDGEERGEKEFRSEVAAMASVHHVNLVRLFGYCNSPTAPRYLVYEYIPNGSLDCWIFPSKENHRRRGGCLAWNLRYKVAIDVAKGLSYLHHDCRRRVLHLDVKPENILLDENYKALVSDFGLSTLVGKDVSQVMTTMRGTRGYLAPEWLLERGVSEKTDIYSYGMVLLEIMGGRRNVSRVEDPRDRSKKKWEFFPKIVNEKVREGKLMEIVDHRLVESGGVEESEVIRLVYIALWCIQEKPRLRPSMAQVVDMLEGRVRVDEPPGSRMILVDLLAVDEDPADHRNLARLLTTVSSNLDCTSTYSLGTANTILSGR	447

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pste6g02895	447	Gene3D	Phosphorylase Kinase; domain 1	68	178	-	-
	Pste6g02895	447	SUPERFAMILY	Protein kinase-like (PK-like)	86	387	IPR011009	-
	Pste6g02895	447	Coils	Coil	55	75	-	-
	Pste6g02895	447	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	229	241	IPR008271	GO:0004672\|GO:0006468
	Pste6g02895	447	ProSiteProfiles	Protein kinase domain profile.	103	390	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pste6g02895	447	PANTHER	OS07G0415500 PROTEIN	33	397	-	-
	Pste6g02895	447	Pfam	Protein kinase domain	108	384	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pste6g02895	447	FunFam	Putative receptor-like protein kinase	70	178	-	-
	Pste6g02895	447	SMART	serkin_6	103	386	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pste6g02895	447	ProSitePatterns	Protein kinases ATP-binding region signature.	109	131	IPR017441	GO:0005524
	Pste6g02895	447	FunFam	Putative receptor-like protein kinase	179	394	-	-
	Pste6g02895	447	Gene3D	Transferase(Phosphotransferase) domain 1	179	394	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pste6g02895	Pste-Chr6	16775877	16777543	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pste6g02895	1	398	Receptor kinase-like Gene Family	AT5G20050	65.337	0.0	515

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_SD-2b	Pste6g02895		Pkinase	1.1e-44	CL0016