Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste6g02852 atgacgatggacgatgatagctccatatatgtagggggtctcccatacgacgccaccgaagaaaccattcgcaccgtcttcaatttgtatggcgccatccttgatgttaagattatcaacgaccagcgcaccaggggaaagtgctattgttttgttactttcacaaatcctaggtcagcaatcgatgccatcaacgacatgaatggcagaaccattgaggggcgtgtggttaaagttaatggggtgagggctcgtgggggcagatcaaattttggccgagaacgttattattatcataatgacgagaggaatggagattgggatcgtagtagagaccgagaccgagattatgatcatgataataatgatagggatggatataggaatcgtaacagtgattggactcgagaccgtgacaggtctcgcgagcgtgatcaaggtagggatagaagatttgaacatatgcatgactatgatcaagctagagaaccgattttagataatgactggagtagagaggatgatagagttgaaaaagaacaagaacgcaccagggcacatgctggagatgtggacagagaccactccttggatttgaattcggacaggaaaatggataggaccagtgatcctgatagaagttttgatgaggataggaaagatcaatcaaggagaaacaatgacttaagtgtcacaaatcaacagagcatggatctttcatcagattcaactggtactcacaatgatcaggtagaagctcaattagagaggtcaactcaagagcttgatgaactaaaaaaagaggtttctcagatggaagagggattggaagagaaaaggctccttgttaaggaattacaaaagcaatctaagaaactggaggatgcactgatcaatgcaaagaaaaactcttcatatcggcagatgcaattggtaaaggtaatagctagttgtcatggtcatacattggatgctgcagtccctatactaatgtcaaattcatga 1005 0.0 MTMDDDSSIYVGGLPYDATEETIRTVFNLYGAILDVKIINDQRTRGKCYCFVTFTNPRSAIDAINDMNGRTIEGRVVKVNGVRARGGRSNFGRERYYYHNDERNGDWDRSRDRDRDYDHDNNDRDGYRNRNSDWTRDRDRSRERDQGRDRRFEHMHDYDQAREPILDNDWSREDDRVEKEQERTRAHAGDVDRDHSLDLNSDRKMDRTSDPDRSFDEDRKDQSRRNNDLSVTNQQSMDLSSDSTGTHNDQVEAQLERSTQELDELKKEVSQMEEGLEEKRLLVKELQKQSKKLEDALINAKKNSSYRQMQLVKVIASCHGHTLDAAVPILMSNS 334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste6g02852 334 MobiDBLite consensus disorder prediction 227 250 - -
Pste6g02852 334 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 7 84 IPR000504 GO:0003723
Pste6g02852 334 PANTHER GEO13361P1-RELATED 6 160 - -
Pste6g02852 334 SUPERFAMILY RNA-binding domain, RBD 4 110 IPR035979 GO:0003676
Pste6g02852 334 MobiDBLite consensus disorder prediction 108 226 - -
Pste6g02852 334 CDD RRM_SF 9 80 - -
Pste6g02852 334 Coils Coil 248 303 - -
Pste6g02852 334 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 9 78 IPR000504 GO:0003723
Pste6g02852 334 SMART rrm1_1 8 80 IPR000504 GO:0003723
Pste6g02852 334 Gene3D - 2 97 IPR012677 -
Pste6g02852 334 MobiDBLite consensus disorder prediction 108 250 - -
Pste6g02852 334 FunFam RNA-binding (RRM/RBD/RNP motifs) family protein 2 195 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste6g02852 Pste-Chr6 16298693 16302187 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste6g02852 7 79 Eukaryotic Initiation Factors Gene Family AT2G36660 34.247 2.25e-08 53.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste6g02852 6 16298693 16302187 Pste6g02852 6 16298693 16302187 ECH