Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste6g02818 atgagctggcgcagggtgttgaagtcagcacaggtgctcgctgcgcacactttcctgttatccttcactctcttcctcgttctcaagcttgatcatagtatctcttgttcttggtggataatatttttacctctttggatgttccatggtgttgtggctcgaggaaggttttcattacctgcaccatctgctccacgtaatcgaaattgggcaccatgccatgccgttgttgcaacgccattgcttgttgcatttgaattgctcctttgtatatatcttgagagcttatatgttcgtggctatgcagcagttgatctaaagatagtgtttcttcccttactaacatttgaaatcattattctcattgacaatttcagatcaccatgtcatctacatgtacaagtacaactaactcagcacattgttgcagatggctccaagcaaggtcctgacacgatgtgtaaggctctaatgccaggggatgaagaaaacatgagtgatgaggcaatatgggaaactcttcctcacttctgggttgcaatctctatggttttcttcattgctgctacagtctttacactcctaaaactgagtggtgatgtaggtgctcttggctggtgggacttgtttattaactttgctatcgccgagtgctttgcttttcttgtatgtacaaagtggtccaatccagtcattcatagaaattcaagggaagctactagttcatcttcaactacgattagatatcttgactggaacagtggtttagtggtttctacagatgaaaatcaacagcaagggaggatgtgtagcctgcaagacataggaggtcatctcatgaaagtaccaattattgtattccaggcaacacctgcttgtgctgtagatatacctcttccacttcttttctctcccattttcttactgcaaggagctggtgtactgttatctggatctaaattagcagagaaacttgtgcttctgctacgaagtggagctggtggaggaatatattttagattttcttcaagagctcatgattgcttggggttcttgcactatggttctagattattaggctggtggtcaattgatgaagggagtcgggaagaacaagcacgactataccatgagggagcatcagggtataatacgttctgtggttatcctcctgagattgttaagaaaatgccaaaaaaagaacttgcggaagaggtttggagactccaggcagctcttggtgaacaaactgaaattacgaaattcagccaacaggaattccttgtgaagtatcatttgacccttttcgtgttaatggcttgtgtgtttcaggagaaagtgttgtgcagaatttgtttcgagggagagattaacgttgtattgcttccatgtaggcatcgtgtcctttgcagcacttgcgcagagaagtgtaagaagtgcccaatttgccgtgactctattgctgaacgcctgcctgtatatgatgtttaa 1491 0.0 MSWRRVLKSAQVLAAHTFLLSFTLFLVLKLDHSISCSWWIIFLPLWMFHGVVARGRFSLPAPSAPRNRNWAPCHAVVATPLLVAFELLLCIYLESLYVRGYAAVDLKIVFLPLLTFEIIILIDNFRSPCHLHVQVQLTQHIVADGSKQGPDTMCKALMPGDEENMSDEAIWETLPHFWVAISMVFFIAATVFTLLKLSGDVGALGWWDLFINFAIAECFAFLVCTKWSNPVIHRNSREATSSSSTTIRYLDWNSGLVVSTDENQQQGRMCSLQDIGGHLMKVPIIVFQATPACAVDIPLPLLFSPIFLLQGAGVLLSGSKLAEKLVLLLRSGAGGGIYFRFSSRAHDCLGFLHYGSRLLGWWSIDEGSREEQARLYHEGASGYNTFCGYPPEIVKKMPKKELAEEVWRLQAALGEQTEITKFSQQEFLVKYHLTLFVLMACVFQEKVLCRICFEGEINVVLLPCRHRVLCSTCAEKCKKCPICRDSIAERLPVYDV 496
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste6g02818 496 PANTHER TRANSMEMBRANE FRAGILE-X-F-ASSOCIATED PROTEIN 153 496 - -
Pste6g02818 496 ProSiteProfiles Zinc finger RING-type profile. 449 484 IPR001841 -
Pste6g02818 496 Pfam Zinc finger, C3HC4 type (RING finger) 446 488 - -
Pste6g02818 496 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 439 496 IPR013083 -
Pste6g02818 496 SUPERFAMILY RING/U-box 436 491 - -
Pste6g02818 496 SMART ring_2 449 483 IPR001841 -
Pste6g02818 496 Pfam Transmembrane Fragile-X-F protein 28 130 IPR019396 -
Pste6g02818 496 Pfam Transmembrane Fragile-X-F protein 153 309 IPR019396 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste6g02818 Pste-Chr6 15857710 15871123 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste6g02818 1 496 C3H Transcription Factor Family AT1G73950 64.484 0.0 631
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste6g02818 6 15857710 15871123 Pste6g02818 6 15857710 15871123 ECH