Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste6g02766 atgcctgttggaattgataagtcgtctgagaagcgagtgatgaagattccaaaagtagcaaacaagagtgagaaaaagtttcttggggtgagacaaagaccttcaggaagatggattgctgagatcaaggactcctctctgaaactaaggctttggttaggaacttttgacaaagcagaagaggctgccctggcttatgactgtgctgcaaggcttctcagaggtaaaaatgccaaaacaaacttcccaaaccctggaaccatcaacactcatgaagaagattgcagcattttggataagaatccaagggcttaccaacttcttaggcatgcagtcatgaagaaccatccactttcatcatctctttactccacagtcatgccttggaaaaaccagatcatgagaaacgaatatgacaaccttgttgaggaaactatagtttgttccattcctgaacaagtttctggctattgtggaatttcatttggaagttctaaggtttattcttctgttattgtagctccttcattcagtgtttctcatgatgaaaccccctaa 558 0.0 MPVGIDKSSEKRVMKIPKVANKSEKKFLGVRQRPSGRWIAEIKDSSLKLRLWLGTFDKAEEAALAYDCAARLLRGKNAKTNFPNPGTINTHEEDCSILDKNPRAYQLLRHAVMKNHPLSSSLYSTVMPWKNQIMRNEYDNLVEETIVCSIPEQVSGYCGISFGSSKVYSSVIVAPSFSVSHDETP 185
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste6g02766 185 Gene3D AP2/ERF domain 25 84 IPR036955 GO:0003700|GO:0006355
Pste6g02766 185 PRINTS Ethylene responsive element binding protein signature 27 38 IPR001471 GO:0003700|GO:0006355
Pste6g02766 185 PRINTS Ethylene responsive element binding protein signature 49 65 IPR001471 GO:0003700|GO:0006355
Pste6g02766 185 ProSiteProfiles AP2/ERF domain profile. 26 83 IPR001471 GO:0003700|GO:0006355
Pste6g02766 185 Pfam AP2 domain 26 75 IPR001471 GO:0003700|GO:0006355
Pste6g02766 185 FunFam ethylene-responsive transcription factor RAP2-11 25 84 - -
Pste6g02766 185 SUPERFAMILY DNA-binding domain 26 83 IPR016177 GO:0003677
Pste6g02766 185 SMART rav1_2 26 89 IPR001471 GO:0003700|GO:0006355
Pste6g02766 185 CDD AP2 25 84 IPR001471 GO:0003700|GO:0006355
Pste6g02766 185 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 21 116 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste6g02766 Pste-Chr6 15343739 15344421 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste6g02766 7 84 AP2-EREBP Transcription Factor Family AT5G19790 58.974 2.78e-25 96.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Pste6g02766 AP2 2e-10 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste6g02766 6 15343739 15344421 Pste6g02766 6 15343739 15344421 ECH