Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste6g02744 atggtgtcgccaacttccactacctttctcctacttttcattttgcttcctctaagattctccaatgcacgtagccaccagcaagctaagaaaacactggtggttgccaaacttgaaacacccaaaaatcccgtgaacgtagagatttatcatggtgttccagcagtttctgagacacatcaaggaacgagattgcatccaggaaggaagatgatatctggaggagtactctggaagtcgaatgtgctagaggcagaggatagaatgggtttaaccaccacaaaatggaaggcgcattgtgtgattggaagttgcaaccatgaagaccaagggaaaggaattttgaatgtgaaacataaaagcgtgattgtgattgggattcggaattggaaggggaggttgcgagatccgacgaggatgtcattgtggttggggtctccaaagaagcgggtaaaatcccaagtagaggaggatgagggcgtttgttgtgggatttgctacgccgagcgcggggtttccatcgcaggggaaatcgattcctgcagccactacttctgcttcgtctgcatcatggaatgggccaagcacgagtctcgatgccctatttgtcgccaacgattctccaacgttcgcaggctccctatgcacggcgttttttcttcctctcgagacgttaaggtccctcatcgtgaccaggtttatcatcctcatggaaatatggcaactggtccatctgattcttatgctgaaaccaaatgtagtgtctgccaagctgggacagatgagcatcttctactactttgtgatctttgtgatactgcttcacacacatactgtgttggcctgggctatactgttcctgatggtgattggttttgtcacgattgtgctatttcccgggaggccaataccaatgaagaatcagaccaacaaaatgttgcaccagcagaagatccaagtgtaaccgtcgatatctttgatattgtcagggaaacaggtagccgggtggttaaaagaccaaggccatctcctttacaacaaaacctgtcatctcctgctattcctttatctgataggttgagtagattcaaaggaaaaagtcctgtcatagatgtccatcatagacagtgtaatatacaggcacttcgtgaaaattggaatgctttgagaagtggttcattacggttccatggaaattcatttcaacctggcgcaacagttagtcaaaaacaagattctagttccgtatcacaagataaattacatgattcacattctatgccttccacaagccttagacaatccactggccaaggtggtcctactaacaaaatgttaaatgagagagtcagtaaagatgtcgacatggcttggaaaatgatggatagagcaaagagggtgcaactgacttgtcaaagaactagcagcactccgcacggagtggataaaccctcatgcagtggaggagctagaaaattatcatttgcgcattgtaatttcccggaactgaaagataaacattccaaagcattagatttaaggaagacccataaagagaagcagtgtgactactcagtctactctagactccaccagaattttaaaaatcactcaaccctgaagctggaagataaaaagcagattagtgttacatgtgaggaggtcatacaccatgtaagggaccatactactcattcagaaggatattgtgaacgatcattgtccagaaagatccatactagtatccaaggtattcccggtcatgaagatggagatagaaatgttgttgaggaacaaagcttgtctgcttgcttagtaacttcagcagatttagcttcctctcatggcaagtttggtagtttgttctcaactgatagggatgtggatctggtcaatgaaggaaagagattgactaaaagctttgaggatggaaatacaagaaaaactgagatacagtctcttgttaaattgaatctgaagctcttaactagagataaaaagttaggtgttgataccttcaagctagttgcaaggcaggccacccataccatcttggctacttgcagttctgagacgcaaatatctagttcatcctcctctaactcaatatgcagccatgccaacaatactcttcagtttcagaaatctactttaatgcctaattgttgcaggcaatgcttttatgcctttgtaaacaatgttgtcaatgccatcatgttggaaaaagtgggttgcgcttga 2241 0.0 MVSPTSTTFLLLFILLPLRFSNARSHQQAKKTLVVAKLETPKNPVNVEIYHGVPAVSETHQGTRLHPGRKMISGGVLWKSNVLEAEDRMGLTTTKWKAHCVIGSCNHEDQGKGILNVKHKSVIVIGIRNWKGRLRDPTRMSLWLGSPKKRVKSQVEEDEGVCCGICYAERGVSIAGEIDSCSHYFCFVCIMEWAKHESRCPICRQRFSNVRRLPMHGVFSSSRDVKVPHRDQVYHPHGNMATGPSDSYAETKCSVCQAGTDEHLLLLCDLCDTASHTYCVGLGYTVPDGDWFCHDCAISREANTNEESDQQNVAPAEDPSVTVDIFDIVRETGSRVVKRPRPSPLQQNLSSPAIPLSDRLSRFKGKSPVIDVHHRQCNIQALRENWNALRSGSLRFHGNSFQPGATVSQKQDSSSVSQDKLHDSHSMPSTSLRQSTGQGGPTNKMLNERVSKDVDMAWKMMDRAKRVQLTCQRTSSTPHGVDKPSCSGGARKLSFAHCNFPELKDKHSKALDLRKTHKEKQCDYSVYSRLHQNFKNHSTLKLEDKKQISVTCEEVIHHVRDHTTHSEGYCERSLSRKIHTSIQGIPGHEDGDRNVVEEQSLSACLVTSADLASSHGKFGSLFSTDRDVDLVNEGKRLTKSFEDGNTRKTEIQSLVKLNLKLLTRDKKLGVDTFKLVARQATHTILATCSSETQISSSSSSNSICSHANNTLQFQKSTLMPNCCRQCFYAFVNNVVNAIMLEKVGCA 746
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste6g02744 746 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 239 320 IPR013083 -
Pste6g02744 746 ProSiteProfiles Zinc finger PHD-type profile. 250 299 IPR019787 -
Pste6g02744 746 Pfam Ring finger domain 163 204 IPR001841 -
Pste6g02744 746 ProSitePatterns Zinc finger RING-type signature. 181 190 IPR017907 -
Pste6g02744 746 SMART ring_2 163 203 IPR001841 -
Pste6g02744 746 SUPERFAMILY FYVE/PHD zinc finger 246 300 IPR011011 -
Pste6g02744 746 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 144 213 IPR013083 -
Pste6g02744 746 MobiDBLite consensus disorder prediction 341 355 - -
Pste6g02744 746 MobiDBLite consensus disorder prediction 400 445 - -
Pste6g02744 746 SUPERFAMILY RING/U-box 148 211 - -
Pste6g02744 746 ProSiteProfiles Zinc finger RING-type profile. 163 204 IPR001841 -
Pste6g02744 746 Pfam PHD-finger 253 297 IPR019787 -
Pste6g02744 746 SMART PHD_3 252 297 IPR001965 -
Pste6g02744 746 MobiDBLite consensus disorder prediction 400 447 - -
Pste6g02744 746 MobiDBLite consensus disorder prediction 335 359 - -
Pste6g02744 746 PANTHER F18C1.6 PROTEIN 151 743 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste6g02744 Pste-Chr6 15065819 15071682 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste6g02744 244 300 C2H2 Transcription Factor Family AT3G01460 39.655 1.28e-08 57.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Pste6g02744 PHD 1.3e-08 CL0390