Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste6g02718 atgggaagggggagggttgaactgaagaggatagagaacaaaattaacaggcaagtcacatttgccaagagaagaaatgggttgctcaagaaggcctatgagctctcagtcctttgtgatgctgaggttgctctcatcatcttctccaaccgtggcaagctttatgagttcagcagcacctcaagtatgatgaaaacactggacaagtaccagaagtacagttacagtgcactggagagtacccgacccattaacgacactcagaactaccaggaatatttgagattaaaagcaagggttgaagtcttgcagcgttctcaaaggaacctacttggggaagaccttgcccaaatgaatacgagtgagctagagcagcttgagaatcaactggagagagcactgaggaatattaggtccacaaagacccaattcatgcttgaccagcttgctgatcttcatcaccgggaaacattgcttgttgaaactaataatgtgctaaggagtaagttggaagaaactaataactcattagttccagtaagtctagctttggaagctggaggatctaacatccattactccaactttccacctcaatcatcagaggggttcttccagccagtgggagtgaatcccaacttgcaaattggatacaaccagactggtcctgatgatgcaaacgttggaacttcatccttaagtatgcatggattcgcctctgggtggatgctttga 735 0.0 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFSSTSSMMKTLDKYQKYSYSALESTRPINDTQNYQEYLRLKARVEVLQRSQRNLLGEDLAQMNTSELEQLENQLERALRNIRSTKTQFMLDQLADLHHRETLLVETNNVLRSKLEETNNSLVPVSLALEAGGSNIHYSNFPPQSSEGFFQPVGVNPNLQIGYNQTGPDDANVGTSSLSMHGFASGWML 244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste6g02718 244 ProSiteProfiles K-box domain profile. 86 176 IPR002487 GO:0003700|GO:0005634|GO:0006355
Pste6g02718 244 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Pste6g02718 244 Gene3D - 13 83 IPR036879 GO:0003677|GO:0046983
Pste6g02718 244 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Pste6g02718 244 Pfam K-box region 86 170 IPR002487 GO:0003700|GO:0005634|GO:0006355
Pste6g02718 244 FunFam MADS-box transcription factor 1 13 88 - -
Pste6g02718 244 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Pste6g02718 244 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 164 - -
Pste6g02718 244 Coils Coil 116 143 - -
Pste6g02718 244 CDD MADS_MEF2_like 2 78 IPR033896 GO:0000977|GO:0045944
Pste6g02718 244 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Pste6g02718 244 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Pste6g02718 244 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Pste6g02718 244 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Pste6g02718 244 SUPERFAMILY SRF-like 2 79 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste6g02718 Pste-Chr6 14707004 14713068 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste6g02718 1 217 MADS-box Gene Family AT5G15800 61.261 2.91e-87 258
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Pste6g02718 K-box 7.6e-26 No_clan