Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste6g02707 atggaatcttggacctatgttcctggggaaaaggagtgtgtctccaatgacccactctcacctcacaccactatcgggaagactaaaaattctttcttgggctgggagctcaaaaccccatgtggtttttccaatgaaatgttgggtttaagtcagcacaacattgaaaatcaaggttttgaagaactgagttttcctgaaatgctggggaaacacttgtctgatgatctaattgggagtgttccaacaagcagaaaggtggatggtagacaacaccagcaacacagtgacagaatcattggcactgttgtggatgccccaagtgggttttatcaaaaaggggattcaaattccaagctttcaaattcaaattccctcattgatttgaagttaggtcgatttgctgaccatggagatttcactgatccggcgttctccaaagttttgtcttcttctgagtcatcaactcctcctaagagggtgagagcttcagggttgcactctcagaatgcatattgccaagtttatggctgtaacaaggatctcagctcctgtaaggactaccacaagaggcacaaggtgtgtgaggttcactccaagactgctacagttatagtcaatggcattgagcagaggttttgccagcaatgtagtaggtttcatttgctggctgaatttgatgatggtaagcgaagctgccgcaaacgccttgcaggtcataatgagcgtagaagaaaaccacaaatgggtattcaccctggaaagtctgggaggttgcttcagccatgtggggatagcagactccagggaaccatgctaacatcatcttttattcgtccagagatgcttcctagtggggtcatgtgttccgagaaatatggtatgaatggcttctggagacctatcaaagcagaaaatggggctggttttaggcatctttcttctgtgcctgtaaccaatggacattctcagtcaagatctttatttccatcgtataatggaaaacaatttccttttcttcatgaaaatggtgctacatccaccacaggaagcatcttctgtgagagcaatagccactatccacctgccctcgggactcaaaattctgggttaagacctgtattccaggacacggtaggaaatgaggacttcaatgtttttgacaccgcatcaactgttcaaggattatcagggatttcagactcttgttgtgctctctctcttctgtcatctcagtctcagaactcttcaagccaatcatcaggaattcccttggctcactccttggtcattccaagcagtcatagtcatcactacaacatgagtcatgtctctgaaaagataggaataagctcacggacttcttcaagccgagtgtcagatagttttccatctgaactaaatcatgcagatggaagtcatctcagtcctgtattaatatcagacagtaatgatattgtaaactttgatatggcagatggaatcttccaaggttcagacttcatgaatgtgaaggatcgtctttcctgtgaagacggtgcaaccattgacttgctacaattgtcatcacaacttcagcgggttgagcatgaaaggcaatccttgcaggtgaagcaagagaatgattcttcttgcactctgcggattacataa 1653 0.0 MESWTYVPGEKECVSNDPLSPHTTIGKTKNSFLGWELKTPCGFSNEMLGLSQHNIENQGFEELSFPEMLGKHLSDDLIGSVPTSRKVDGRQHQQHSDRIIGTVVDAPSGFYQKGDSNSKLSNSNSLIDLKLGRFADHGDFTDPAFSKVLSSSESSTPPKRVRASGLHSQNAYCQVYGCNKDLSSCKDYHKRHKVCEVHSKTATVIVNGIEQRFCQQCSRFHLLAEFDDGKRSCRKRLAGHNERRRKPQMGIHPGKSGRLLQPCGDSRLQGTMLTSSFIRPEMLPSGVMCSEKYGMNGFWRPIKAENGAGFRHLSSVPVTNGHSQSRSLFPSYNGKQFPFLHENGATSTTGSIFCESNSHYPPALGTQNSGLRPVFQDTVGNEDFNVFDTASTVQGLSGISDSCCALSLLSSQSQNSSSQSSGIPLAHSLVIPSSHSHHYNMSHVSEKIGISSRTSSSRVSDSFPSELNHADGSHLSPVLISDSNDIVNFDMADGIFQGSDFMNVKDRLSCEDGATIDLLQLSSQLQRVEHERQSLQVKQENDSSCTLRIT 550
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste6g02707 550 SUPERFAMILY SBT domain 171 250 IPR036893 GO:0003677|GO:0005634
Pste6g02707 550 FunFam Squamosa promoter-binding-like protein 14 164 234 - -
Pste6g02707 550 Gene3D - 164 234 IPR036893 GO:0003677|GO:0005634
Pste6g02707 550 Coils Coil 518 538 - -
Pste6g02707 550 Pfam SBP domain 173 246 IPR004333 GO:0003677
Pste6g02707 550 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 91 536 IPR044817 GO:0003677
Pste6g02707 550 ProSiteProfiles Zinc finger SBP-type profile. 170 247 IPR004333 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste6g02707 Pste-Chr6 14585329 14596496 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste6g02707 127 288 SBP-box Gene Family AT1G69170 58.025 1.12e-55 191
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Pste6g02707 SBP 4.5e-31 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste6g02707 6 14585329 14596496 Pste6g02707 6 14585329 14596496 ECH