LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pste6g02698	atgaacgggttaagaactgagacagcgcctctcttggatgctgagcgcagtagtatacagggaagaggaaagagggatggcgccgcggaaggtcaagtctcagacctagaacatggtgatgaagtgccggctgcaaatgtgggattctgtcgagtgctttcacttgcaaagcctgaggctgggaagttggtgattggtacagtggctctgttgattgctgccacatcaagtatcttagttcaaaaatttggtgggaagataattgacattgtctcaagggatctccgaactccagaggagaaagatgaagctttgagtgctgttaagaacaccatactagaaatctttctgattgttgtcttcggttcaatttgcaccgctcttcgagcttggcttttttatactgctagtgaaagggttgttgcacggctgagaaagaatttgttcagtcaccttgtaaaccaggagatagccttttttgatgttactcgcactggggaacttttaagcaggctatctgaagatacacagatcataaagaatgctgcaactaccaatctttctgaggccctgagaaacttttcaactgcattgattggtctgagcttcatgtttgcaacatcttggaagttaacattgttggccttggctgttgtacctgttctttctgttgctgttcgcaagtttggccgttacctgcgtgaactttctcataaaactcaagctgcagctgctgtagcttcatcaattgccgaggaatcctttggtgcaataagaacagtaagatcatttgcccaagaagattatgaaataacacgctactcagagaaagttgatgaaacacttaagcttggtcttaaacaagctaaagttgttggactcttttctggaggccttaatgctgcatccacactttcagttattgtagttgttatatatggagctaatttgacaatcaagggttccatgtcctcgggtgatcttacgtcattcattctttatagtctctcagtgggttcttctatatctggtctatctgggctgtatacagtagttatgaaagctgcaggtgctagcagaagggtatttcaacttttggatcgtacctcatccatgcctaagtctggagataaatgtccactgggtgatcaagatggggaagtagaactagatgatgtatggttttcctatccatcacgccctagtcatccggtgctcaagggcattacattgaaactgcatccaggatcaaaggttgctcttgttggtcctagtggtggtggaaagagtacaattgcaaacttaattgaaagattttatgaccctaccaagggaaagattcttctgaatggggttcctttggtggaaatatcacacaagcatttacacaaaaagttggtgctttggtgcaaaagtgaacttcttgaaacgtactggacactgtccttaaagacttatccgaggtatcctcgcaaatcttctaggatacaatag	1494	0.0	MNGLRTETAPLLDAERSSIQGRGKRDGAAEGQVSDLEHGDEVPAANVGFCRVLSLAKPEAGKLVIGTVALLIAATSSILVQKFGGKIIDIVSRDLRTPEEKDEALSAVKNTILEIFLIVVFGSICTALRAWLFYTASERVVARLRKNLFSHLVNQEIAFFDVTRTGELLSRLSEDTQIIKNAATTNLSEALRNFSTALIGLSFMFATSWKLTLLALAVVPVLSVAVRKFGRYLRELSHKTQAAAAVASSIAEESFGAIRTVRSFAQEDYEITRYSEKVDETLKLGLKQAKVVGLFSGGLNAASTLSVIVVVIYGANLTIKGSMSSGDLTSFILYSLSVGSSISGLSGLYTVVMKAAGASRRVFQLLDRTSSMPKSGDKCPLGDQDGEVELDDVWFSYPSRPSHPVLKGITLKLHPGSKVALVGPSGGGKSTIANLIERFYDPTKGKILLNGVPLVEISHKHLHKKLVLWCKSELLETYWTLSLKTYPRYPRKSSRIQ	497

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pste6g02698	497	FunFam	ABC transporter B family member 25	115	385	-	-
	Pste6g02698	497	MobiDBLite	consensus disorder prediction	18	35	-	-
	Pste6g02698	497	Gene3D	ABC transporter type 1, transmembrane domain	48	377	IPR036640	GO:0005524\|GO:0016020
	Pste6g02698	497	PANTHER	ATP-DEPENDENT PERMEASE MDL1, MITOCHONDRIAL	47	469	IPR039421	-
	Pste6g02698	497	SUPERFAMILY	ABC transporter transmembrane region	51	368	IPR036640	GO:0005524\|GO:0016020
	Pste6g02698	497	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	379	467	IPR027417	-
	Pste6g02698	497	Gene3D	-	382	486	IPR027417	-
	Pste6g02698	497	Pfam	ABC transporter	406	468	IPR003439	GO:0005524
	Pste6g02698	497	ProSiteProfiles	ABC transporter integral membrane type-1 fused domain profile.	64	354	IPR011527	GO:0005524\|GO:0016020\|GO:0055085\|GO:0140359
	Pste6g02698	497	CDD	ABC_6TM_AtABCB27_like	66	362	-	-
	Pste6g02698	497	Pfam	ABC transporter transmembrane region	63	336	IPR011527	GO:0005524\|GO:0016020\|GO:0055085\|GO:0140359
	Pste6g02698	497	MobiDBLite	consensus disorder prediction	1	35	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pste6g02698	Pste-Chr6	14451160	14477549	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pste6g02698	65	468	Calmodulin-binding Proteins	AT2G36910	28.049	4.28e-39	150

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Pste6g02698	6	14451160	14477549	Pste6g02698	6	14451160	14477549	ECH