Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste6g02675 atggccgtcaaatcagtcacacgcgacgccgtttcgatgctcatggcaaatccttctcctgattcctcctcggatctccccgaaatcgttgttcaagtcctcgatctcaagcagagcggcaacagatacatgtttactgctagtgatggaaaaatgaaactgagggcgattcttcccgcgacaatgtactctgaggttctctccgggaacattcaaaacctaggtcttgttcgcattcttgattacactctcaacgatatccccaataaacccgagaaataccttattgtcaccaaatgcgaatctgtgtctcccgcgcttgaagcagagataaagagtgaggaatctgggattcttttaaagtcaaaggaagagagtggagtaaagagtgaaagtacagctggcattcttctgaagccgaagcaggaagtggtggcaaaatctgctgctcagattctacgggaacaacacagaaattcggctcctgcacgaatggcgatgacgcgtagggtgcgccctcttgtttcgttgaatccttatctgggtaattggacaattaaggttaacgttacgagcaaaggaaacatgcgtacctataagaatgccaggggtgaaggttgtgtcttcaatgtcgaattgacggacgaagatggtactcagattcaggcaactatgtttaatgaagccgcgaggaaattttttgacaaatttgcactgggaaaggtctactacatttccaaggggactttgaaggttgctaacaaacaattcaaaactgtgcaaaatgattatgaaatgacactaaatgagaattctgaggtggaagaggtgtgtggtgaagccacttttgttccagaaacaaaattcaactttgtacagattgataagctaggtcctcatgtcaataagtctgaactcgtggatgttattggagttgttaagaatgtgtctacaactatgagtattcgtaggaagagtgacaatgagaacattcctaagcgtgacattactattgctgatgaaacgaaaaagacagtagttgtgtccttgtggaatgatcttgcaactaacacaggacaggagttactggacatggctgacaaatccccagttgttgcaataaaatctctcagggttggggattttcaaggtgtttctttgtcaactataagcagaagtgtggttatggtgaatccagacatacccgaagcaaagaaactcagaagctggtatgattttgaaggtaaagatgcatcaatggactctgtcggctctggttcgagtccaatatctaacagtggaacaagatcagtgtactctgatcgtgtttcactttcttacataatctcaaacccatcattgggggatggcaagccggcatttttcagtcttagaggttatattagcttcataaagcctgatcaggcaatgtggtatcgtgcctgtaagacatgcaataagaaggttattgaaagtgttgattctggatattggtgcgaaggatgccagaaaagcgatgaacaaagcagtctaaggtatattatggttgccagagttagtgatgcaagtggtgagggttttatctctatcttcaatgaggaagctgagaaaatcgtgggatgctctgctgatgatctagataaccttaaatcacaagagggagaagataatccgtatcaactgacattgaagcaagctacttgggctccacatctatttcgcgttagtgttactcaaaacgagtataacagtgagaagcggcaaaggataacagctcgggcagttgttcctgttgattttgctgctgaatcaaggcttatgctggaagagatatcaaagatcagggcataa 1851 0.0 MAVKSVTRDAVSMLMANPSPDSSSDLPEIVVQVLDLKQSGNRYMFTASDGKMKLRAILPATMYSEVLSGNIQNLGLVRILDYTLNDIPNKPEKYLIVTKCESVSPALEAEIKSEESGILLKSKEESGVKSESTAGILLKPKQEVVAKSAAQILREQHRNSAPARMAMTRRVRPLVSLNPYLGNWTIKVNVTSKGNMRTYKNARGEGCVFNVELTDEDGTQIQATMFNEAARKFFDKFALGKVYYISKGTLKVANKQFKTVQNDYEMTLNENSEVEEVCGEATFVPETKFNFVQIDKLGPHVNKSELVDVIGVVKNVSTTMSIRRKSDNENIPKRDITIADETKKTVVVSLWNDLATNTGQELLDMADKSPVVAIKSLRVGDFQGVSLSTISRSVVMVNPDIPEAKKLRSWYDFEGKDASMDSVGSGSSPISNSGTRSVYSDRVSLSYIISNPSLGDGKPAFFSLRGYISFIKPDQAMWYRACKTCNKKVIESVDSGYWCEGCQKSDEQSSLRYIMVARVSDASGEGFISIFNEEAEKIVGCSADDLDNLKSQEGEDNPYQLTLKQATWAPHLFRVSVTQNEYNSEKRQRITARAVVPVDFAAESRLMLEEISKIRA 616
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste6g02675 616 Gene3D - 170 278 IPR012340 -
Pste6g02675 616 Gene3D - 425 614 IPR012340 -
Pste6g02675 616 PANTHER REPLICATION FACTOR A 1, RFA1 184 577 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Pste6g02675 616 Pfam Replication factor-A protein 1, N-terminal domain 6 104 IPR007199 GO:0003677|GO:0005634|GO:0006260
Pste6g02675 616 CDD RPA1_DBD_A 173 276 - -
Pste6g02675 616 FunFam Replication protein A subunit 283 422 - -
Pste6g02675 616 FunFam Replication protein A subunit 427 614 - -
Pste6g02675 616 Gene3D - 5 113 IPR012340 -
Pste6g02675 616 SUPERFAMILY Nucleic acid-binding proteins 440 613 IPR012340 -
Pste6g02675 616 SUPERFAMILY Nucleic acid-binding proteins 289 418 IPR012340 -
Pste6g02675 616 SUPERFAMILY Nucleic acid-binding proteins 5 107 IPR012340 -
Pste6g02675 616 FunFam Replication protein A subunit 170 279 - -
Pste6g02675 616 Pfam Replication protein A OB domain 300 398 IPR031657 -
Pste6g02675 616 CDD RPA1_DBD_B 306 412 - -
Pste6g02675 616 NCBIfam replication factor-a protein 1 (rpa1) 4 613 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Pste6g02675 616 SUPERFAMILY Nucleic acid-binding proteins 172 278 IPR012340 -
Pste6g02675 616 Gene3D - 284 424 IPR012340 -
Pste6g02675 616 CDD RPA1_DBD_C 450 613 IPR047192 -
Pste6g02675 616 Pfam OB-fold nucleic acid binding domain 184 270 IPR004365 GO:0003676
Pste6g02675 616 Pfam Replication factor-A C terminal domain 461 606 IPR013955 -
Pste6g02675 616 FunFam Replication protein A subunit 5 115 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste6g02675 Pste-Chr6 14165986 14169337 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste6g02675 5 613 Core DNA Replication Machinery Family AT5G08020 69.722 0.0 905
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste6g02675 6 14165986 14169337 Pste6g02675 6 14165986 14169337 ECH