Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste6g02671 atggggaatttgttacgacaggctgcgagccggcaggttagttcagaattgcgttcatcaccttcttttttccaggctatacgctgcatgtcctttgctccgactacaaagctgtttataggaggtgtttcttattctactgatgagcaaagcttgagagaagctttttcaaaatatggggaagttgttgatgctaggataattatggatcgtgaaactggtagatccagaggatttggatttattacatacacttccgttgaggaggcatcaagtgctattcaggccttggatggtcagttctctgtttgggatgatgaggttgtcatgaccacatcaggtgatgtaattccgtatttgaatcctgatcttcatggtcgccgggttagggtgaattatgctaatgaaagaccccgcggatatggtggtggcggtaactttggtggttcttttggtgccgggggtggtggtggctatggaggtggttacggcagtggaagctatggtggaaatgctggtggtgggtatggtagtggcagctatagtggtggcagctatggtggaaatgctggtggtggttatggtggtggagggtatggtgcaggtggttatggatcaggtggcaattatggggacagtggctctggcaataactattctgctgctgacagtttccaaggtagtgctgatggtggcagttacagtggtggaagtagtggaggaggctatggtgatgctggtgctgtaggcaatcatcaaagctctgctggttttgccagtagtggatatgatggaggtgctgtggatggtggtgttggtacaggtactggcaccagctttgctgatggctataatggaagtggggggtcagaatttggcaacagtggccaattggatatcaaagaaagcagcagtggagatggggattttggagatgatagggatgacaatgatgatgcagataattttgccaaaagggcttga 984 0.0 MGNLLRQAASRQVSSELRSSPSFFQAIRCMSFAPTTKLFIGGVSYSTDEQSLREAFSKYGEVVDARIIMDRETGRSRGFGFITYTSVEEASSAIQALDGQFSVWDDEVVMTTSGDVIPYLNPDLHGRRVRVNYANERPRGYGGGGNFGGSFGAGGGGGYGGGYGSGSYGGNAGGGYGSGSYSGGSYGGNAGGGYGGGGYGAGGYGSGGNYGDSGSGNNYSAADSFQGSADGGSYSGGSSGGGYGDAGAVGNHQSSAGFASSGYDGGAVDGGVGTGTGTSFADGYNGSGGSEFGNSGQLDIKESSSGDGDFGDDRDDNDDADNFAKRA 327
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste6g02671 327 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 87F-RELATED 10 231 - -
Pste6g02671 327 MobiDBLite consensus disorder prediction 254 327 - -
Pste6g02671 327 SUPERFAMILY RNA-binding domain, RBD 32 147 IPR035979 GO:0003676
Pste6g02671 327 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 36 136 IPR000504 GO:0003723
Pste6g02671 327 MobiDBLite consensus disorder prediction 278 302 - -
Pste6g02671 327 Gene3D - 31 203 IPR012677 -
Pste6g02671 327 CDD RRM2_NsCP33_like 37 134 - -
Pste6g02671 327 SMART rrm1_1 37 111 IPR000504 GO:0003723
Pste6g02671 327 PRINTS Eggshell protein signature 32 48 - -
Pste6g02671 327 PRINTS Eggshell protein signature 192 202 - -
Pste6g02671 327 PRINTS Eggshell protein signature 240 258 - -
Pste6g02671 327 PRINTS Eggshell protein signature 162 177 - -
Pste6g02671 327 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 38 100 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste6g02671 Pste-Chr6 14136587 14140091 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste6g02671 38 203 Eukaryotic Initiation Factors Gene Family AT3G16380 28.402 3.46e-10 58.9
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste6g02671 6 14136587 14140091 Pste6g02671 6 14136587 14140091 ECH