Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste6g02595 atggcgtgtaaggaagatgatcagatggatttgcctcctggatttcgcttccacccaactgatgaagagcttataagccattacctctacaagaaggtcattgacagcaagttctgcgccagggccattggagaagtcgacctcaacaagtctgagccttgggatttgccttataaagcgaaaatgggagaaaaggaatggtactttttctgcgtgagagacagaaaataccccactggcttgagaaccaacagggccactgaagccgggtactggaaggccacggggaaagacaaagagattttcagaggaaaatcgcttgttggaatgaagaaaactctggttttctaccgtggtcgagcacccaaaggagagaaaagcaattgggtgatgcacgaatacaggttggagggcaaattctctgttcacaacctccccaaaactgctaagaacgagtgggtgatttgcagggtgtttcagaagagttcagctggaaaaaaaacccatatttccgggataatgaggttcgactcttttgcaaacgaattgggttcttctgctctcccacccctctcggattcctcaccttctattggtaacactaacactaaaccactcaatgattcggcttacgtgccctgcttctccaatccaattgatgttcaaagaaaccaagaaggggcctttgattccttcaccaactctgtttacggggtttcatcaaatcctttggacagaatgccaccttctgcctcctactactccactcaagctgttcctaacttgtcatttcccggttctgtttacactctgcaggatcactccatcctcagggctttgtgtgaaaacaatggttacaagtcagagagggacatggtcactgtctcgcaggaaactggtctcaccactgatatcaacgctgaaacctcttcaaattttaatatgggcaggacgccctttgacaatcacaatcatccatctgtttctgttgcgccattggatctccatggcttgtggaattactag 1026 0.0 MACKEDDQMDLPPGFRFHPTDEELISHYLYKKVIDSKFCARAIGEVDLNKSEPWDLPYKAKMGEKEWYFFCVRDRKYPTGLRTNRATEAGYWKATGKDKEIFRGKSLVGMKKTLVFYRGRAPKGEKSNWVMHEYRLEGKFSVHNLPKTAKNEWVICRVFQKSSAGKKTHISGIMRFDSFANELGSSALPPLSDSSPSIGNTNTKPLNDSAYVPCFSNPIDVQRNQEGAFDSFTNSVYGVSSNPLDRMPPSASYYSTQAVPNLSFPGSVYTLQDHSILRALCENNGYKSERDMVTVSQETGLTTDINAETSSNFNMGRTPFDNHNHPSVSVAPLDLHGLWNY 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste6g02595 341 Gene3D NAC domain 20 165 IPR036093 GO:0003677|GO:0006355
Pste6g02595 341 Pfam No apical meristem (NAM) protein 12 136 IPR003441 GO:0003677|GO:0006355
Pste6g02595 341 SUPERFAMILY NAC domain 8 161 IPR036093 GO:0003677|GO:0006355
Pste6g02595 341 ProSiteProfiles NAC domain profile. 11 161 IPR003441 GO:0003677|GO:0006355
Pste6g02595 341 FunFam NAC domain-containing protein 100-like 20 165 - -
Pste6g02595 341 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 10 241 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste6g02595 Pste-Chr6 13340250 13341725 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste6g02595 9 341 NAC Transcription Factor Family AT5G07680 59.880 8.08e-138 392
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Pste6g02595 NAM 1e-39 No_clan