Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste6g02590 atggcgcttttgtgtcttttcttagtggggtttctctcatgtgcatatgggaacaatgatggttggatggatgctcatgccaccttctatggagggggtgatgcctctggcacaatgggtggagcttgtggatatggaaacctgtacagcgagggctatgggactagcacagctgctttgagcacggccatgttcaacaatggtttgagctgtggggcctgcttcgagatcaagtgtgtcaatgaccaaaagtggtgccttccaaactcggttgtggttactgccaccaatttctgtccaccaaacaatgccctcccaaatgatgcaggtggctggtgcaaccctccccttcagcattttgatctctctcagcctgttttccaacaaatagctcaatacaaagctggcatagtacctgtagcctacagaagggtcccgtgtgaaaggaaaggaggcacgaggttcaccatcaatggccattcttacttcaacctagtcctaatcagcaacgttggtggtgctggtgatgttcaagcagtttccatcaaaggttcaagaactaattggcaaccaatgtccaggaactggggtcagaactggcaaagcaacacttacctcaacggacaaagtctctccttcaaggttaccactagcgacgggcgcaccttggtctcttacgatgttgtccctgataactggtcctttggccagaccttcccagggcaacaattcaattaa 738 0.0 MALLCLFLVGFLSCAYGNNDGWMDAHATFYGGGDASGTMGGACGYGNLYSEGYGTSTAALSTAMFNNGLSCGACFEIKCVNDQKWCLPNSVVVTATNFCPPNNALPNDAGGWCNPPLQHFDLSQPVFQQIAQYKAGIVPVAYRRVPCERKGGTRFTINGHSYFNLVLISNVGGAGDVQAVSIKGSRTNWQPMSRNWGQNWQSNTYLNGQSLSFKVTTSDGRTLVSYDVVPDNWSFGQTFPGQQFN 245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste6g02590 245 Gene3D - 12 148 IPR036908 -
Pste6g02590 245 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 162 241 IPR007117 -
Pste6g02590 245 FunFam Expansin 152 244 - -
Pste6g02590 245 PRINTS Expansin/Lol pI family signature 61 79 IPR007118 GO:0005576
Pste6g02590 245 PRINTS Expansin/Lol pI family signature 39 57 IPR007118 GO:0005576
Pste6g02590 245 PRINTS Expansin/Lol pI family signature 227 241 IPR007118 GO:0005576
Pste6g02590 245 PRINTS Expansin/Lol pI family signature 135 151 IPR007118 GO:0005576
Pste6g02590 245 PRINTS Expansin/Lol pI family signature 189 203 IPR007118 GO:0005576
Pste6g02590 245 PRINTS Expansin/Lol pI family signature 21 36 IPR007118 GO:0005576
Pste6g02590 245 PRINTS Expansin signature 79 90 IPR002963 GO:0009664
Pste6g02590 245 PRINTS Expansin signature 198 219 IPR002963 GO:0009664
Pste6g02590 245 PRINTS Expansin signature 110 127 IPR002963 GO:0009664
Pste6g02590 245 PRINTS Expansin signature 91 101 IPR002963 GO:0009664
Pste6g02590 245 PRINTS Expansin signature 127 140 IPR002963 GO:0009664
Pste6g02590 245 PRINTS Expansin signature 163 184 IPR002963 GO:0009664
Pste6g02590 245 PRINTS Expansin signature 227 243 IPR002963 GO:0009664
Pste6g02590 245 PRINTS Expansin signature 52 66 IPR002963 GO:0009664
Pste6g02590 245 PRINTS Expansin signature 151 163 IPR002963 GO:0009664
Pste6g02590 245 FunFam Expansin 12 148 - -
Pste6g02590 245 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 40 152 IPR007112 -
Pste6g02590 245 PANTHER EXPANSIN-A15 7 244 IPR002963 GO:0009664
Pste6g02590 245 SMART dpbb_1 57 142 IPR007112 -
Pste6g02590 245 Pfam Expansin C-terminal domain 154 230 IPR007117 -
Pste6g02590 245 Gene3D - 153 244 IPR036749 -
Pste6g02590 245 SUPERFAMILY Barwin-like endoglucanases 6 170 IPR036908 -
Pste6g02590 245 CDD DPBB_EXPA_N 21 147 - -
Pste6g02590 245 Pfam Lytic transglycolase 57 142 IPR009009 -
Pste6g02590 245 SUPERFAMILY PHL pollen allergen 149 240 IPR036749 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste6g02590 Pste-Chr6 13260421 13275052 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste6g02590 4 244 Expansin Gene Family AT2G03090 76.446 1.22e-142 398