Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste6g02560 atgaaaaagaggcaggtggtggtgaaacgcgattatgcaacatcatcagcggggggaaatattcgatacaaagagtgccagaagaatcatgcagcaaatacaggaggttatgctgtggatggttgcagagaattcatggccagcgcgggtgaaggaacaagtgctgcgctgacgtgtgcggcttgcggctgccacaggaactttcacaagaaggaagtactgcacggcataaactga 237 0.0 MKKRQVVVKRDYATSSAGGNIRYKECQKNHAANTGGYAVDGCREFMASAGEGTSAALTCAACGCHRNFHKKEVLHGIN 78
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste6g02560 78 Pfam ZF-HD protein dimerisation region 21 73 IPR006456 -
Pste6g02560 78 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 16 73 - -
Pste6g02560 78 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 22 73 IPR006456 -
Pste6g02560 78 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 23 72 IPR006456 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste6g02560 Pste-Chr6 13007140 13014019 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste6g02560 1 73 Zinc finger-homeobox gene family AT1G18835 69.737 2.43e-30 100
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Pste6g02560 ZF-HD_dimer 6.2e-30 No_clan