LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pste6g02557	atgtacgacatggggagaccaccgtgctgtgacaaaattgggattaagaaaggaccctggactcctgaggaagacatcatcttggtgtcttacattcaagaacatggaccaggaaattggagatcagttccaaccaacacaggtttgatgagatgcagtaagagctgcaggctgagatggactaactatcttcgaccgggtatcaaacgaggtaatttcacggaacatgaggagaagatgataatccacctccaagcccttttgggaaacagatgggctgcaatagcttcatatcttccacaaaggacagacaatgacataaaaaattattggaacacccatttgaagaagaagctgaggctaaatgatcaaagtgggtctgatgagggtgttgaccaagagggacagtcttgttcttcttcttcacacccaaaaggtcagtgggaaagaagactacaaacagatatccaaatggcaaagaaagccttgtgtgatgcgttgtcccttcacaagccagcaacaacccatgttgtggcagatactaatccagtttcttcagcttctcatcaaccctacaaccatgcatcatattcctatgcatcaagctacgaaaacatttcacgattgatggaaaactggatcaaacccccaaactcatcaaatgaaacaacctcgggagggtattattcattcaacgtggtgaacaacacaggaggatccagttctagtgaaggagcacatagcaccatcagcactaccacatgtgcacaagaacatgcttttgactccttgttgaccttgaactcctccaaacattatgactctccttctcagaccacgcaagttcctcttactctgctggagaattggctttttgaagatggggcacctcaatgtcatgaagatctcatgaacatgtcgctggaagaaagtaccgcagctcttgctaatgcaaacttttctagacctgtgaacgtacgagaaggtaattaa	993	0.0	MYDMGRPPCCDKIGIKKGPWTPEEDIILVSYIQEHGPGNWRSVPTNTGLMRCSKSCRLRWTNYLRPGIKRGNFTEHEEKMIIHLQALLGNRWAAIASYLPQRTDNDIKNYWNTHLKKKLRLNDQSGSDEGVDQEGQSCSSSSHPKGQWERRLQTDIQMAKKALCDALSLHKPATTHVVADTNPVSSASHQPYNHASYSYASSYENISRLMENWIKPPNSSNETTSGGYYSFNVVNNTGGSSSSEGAHSTISTTTCAQEHAFDSLLTLNSSKHYDSPSQTTQVPLTLLENWLFEDGAPQCHEDLMNMSLEESTAALANANFSRPVNVREGN	330

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pste6g02557	330	ProSiteProfiles	Myb-type HTH DNA-binding domain profile.	69	119	IPR017930	-
	Pste6g02557	330	FunFam	MYB-related transcription factor	16	69	-	-
	Pste6g02557	330	PANTHER	MYB FAMILY TRANSCRIPTION FACTOR	4	247	-	-
	Pste6g02557	330	CDD	SANT	72	115	IPR001005	-
	Pste6g02557	330	Gene3D	-	16	69	-	-
	Pste6g02557	330	ProSiteProfiles	Myb-type HTH DNA-binding domain profile.	12	68	IPR017930	-
	Pste6g02557	330	CDD	SANT	19	64	IPR001005	-
	Pste6g02557	330	Coils	Coil	330	330	-	-
	Pste6g02557	330	MobiDBLite	consensus disorder prediction	128	147	-	-
	Pste6g02557	330	SUPERFAMILY	Homeodomain-like	14	111	IPR009057	-
	Pste6g02557	330	Gene3D	-	72	141	-	-
	Pste6g02557	330	ProSiteProfiles	Myb-like domain profile.	65	115	IPR001005	-
	Pste6g02557	330	FunFam	Transcription factor MYB96	72	153	-	-
	Pste6g02557	330	Pfam	Myb-like DNA-binding domain	70	115	IPR001005	-
	Pste6g02557	330	Pfam	Myb-like DNA-binding domain	17	64	IPR001005	-
	Pste6g02557	330	SMART	sant	69	117	IPR001005	-
	Pste6g02557	330	SMART	sant	16	66	IPR001005	-
	Pste6g02557	330	MobiDBLite	consensus disorder prediction	123	149	-	-
	Pste6g02557	330	ProSiteProfiles	Myb-like domain profile.	12	64	IPR001005	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pste6g02557	Pste-Chr6	12942710	12944468	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pste6g02557	4	308	MYB Transcription Factor Family	AT5G62470	51.124	5.16e-103	305

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	MYB	Pste6g02557		Myb_DNA-binding	1e-14	CL0123