Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste6g02545 atggagggaggggacgatctccaacatcatcaccaccaccgccaccgtcagaacttcccattccagctcctggagaagaaagaagagcaagaagcggcatcatgctccacctcctccccgtacccttccctagcaatatccgcggaaccaagcacatccaattccacccgatccaaccagctggcggtggtgccggagccgccaaacaacaaaaagccggcgccgaaacgcacgtcgacgaaggaccggcacacgaaggtggacgggaggggccgccgcatccgaatgccggctctgtgcgccgcccgcgtcttccagctgacccgagaactggggcacaagtccgacggtgaaaccatagagtggctcctccaacaggcggagccggcggtgatagcggcgacgggcaccggcaccatcccggcgaacttcacctccctcaacatctcgctccgcagctccgggtcgtcgatgtccgtgccctcccagctccgatcgtcctacttcaaccccaacttctccctccaacaacgtcgttccttgttccccggcatagggctatcttcctcggagaaccccaacaacagctccacactcctgaatttccaatccaacaacctcaacacggcgatgctgcaggccaagccggaagcagcctcttccacgttggatttgtcggagacaagcgcggaggaatcgagtatggggagaaaaagaagaccgacggaacaagacttatcctcgacgcagcaccaaatggggagttatctcctgcagtcgagtgcaggggcgattccagcgactcacgctgccaatatatggatggtggcgaattcaaactccaatcaagtcatgagtggcgatcccatatggaccttcccacaggttaataacaccgccttgtatcgagggaccatgtctagcggcttgcatttcatgaattttccaactcccatggctttgttgccaagtcagcaactggggtcttctgggattggtgctgttggtggaagcaataataatatgaatgaaggccatttgagtatgcttgcgggacttagcccttatcgtcctgttattggtatttctgaatctcagcctactgcctcgcaatcgcatcgtgcagctgcctccgatgatcgccatgataccaccactcaccactcctag 1170 0.0 MEGGDDLQHHHHHRHRQNFPFQLLEKKEEQEAASCSTSSPYPSLAISAEPSTSNSTRSNQLAVVPEPPNNKKPAPKRTSTKDRHTKVDGRGRRIRMPALCAARVFQLTRELGHKSDGETIEWLLQQAEPAVIAATGTGTIPANFTSLNISLRSSGSSMSVPSQLRSSYFNPNFSLQQRRSLFPGIGLSSSENPNNSSTLLNFQSNNLNTAMLQAKPEAASSTLDLSETSAEESSMGRKRRPTEQDLSSTQHQMGSYLLQSSAGAIPATHAANIWMVANSNSNQVMSGDPIWTFPQVNNTALYRGTMSSGLHFMNFPTPMALLPSQQLGSSGIGAVGGSNNNMNEGHLSMLAGLSPYRPVIGISESQPTASQSHRAAASDDRHDTTTHHS 389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste6g02545 389 ProSiteProfiles TCP domain profile. 80 134 IPR017887 -
Pste6g02545 389 MobiDBLite consensus disorder prediction 375 389 - -
Pste6g02545 389 MobiDBLite consensus disorder prediction 33 65 - -
Pste6g02545 389 Pfam TCP family transcription factor 78 247 IPR017887 -
Pste6g02545 389 MobiDBLite consensus disorder prediction 215 230 - -
Pste6g02545 389 MobiDBLite consensus disorder prediction 18 32 - -
Pste6g02545 389 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 30 352 IPR005333 GO:0003700
Pste6g02545 389 MobiDBLite consensus disorder prediction 1 92 - -
Pste6g02545 389 MobiDBLite consensus disorder prediction 231 245 - -
Pste6g02545 389 MobiDBLite consensus disorder prediction 365 389 - -
Pste6g02545 389 MobiDBLite consensus disorder prediction 215 251 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste6g02545 Pste-Chr6 12760505 12764384 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste6g02545 71 326 TCP Transcription Factor Family AT3G47620 47.879 2.80e-61 203
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Pste6g02545 TCP 9e-41 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste6g02545 6 12760505 12764384 Pste6g02545 6 12760505 12764384 ECH
Pste1g01080 1 3494132 3495340 Pste6g02545 6 12760505 12764384 PCT