Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste6g02544 atgggatcagagagtgtggctccggtggctgacacatcaaaaagcaggtcttcttctggtcctgttaaaatgatcgaagggaaagtccccaggaaaatgcacaaggctgaaagggagaaaatgaagcgtgaacatttgaatgaactctttcttgatcttgccaatgcacttgatctaaatgagaacaatggaaaggcttctatattgtgtgaagcagcccggttgctaaaagacttgctctgtcagattgaatctcttaagaaagagaatgtcactctgttgtctgaatctcattatgtgaccatggagaaaaatgagctgaaggaggagaatggtagcctagaaactcaaattgagaaacttcatggtgagatacaggcaagagtggctcaatctaaacctgacctaaatgtacctctccatttggaacttgagccaatggagcagacaaattttacaggacagaatctccaattgcataccatagatcccaatttgcagcaaggatctgcggttttggttgtcccctttcgtcctggtcttcaagcttcttttccatctcctaatgttaccgaggtcacaccagaatctacatctgttgtcagtaaaccccatgccaggtatcccacatcagcggattcatggccatcacagctacttggagagcaaccaacttcaagttaa 684 0.0 MGSESVAPVADTSKSRSSSGPVKMIEGKVPRKMHKAEREKMKREHLNELFLDLANALDLNENNGKASILCEAARLLKDLLCQIESLKKENVTLLSESHYVTMEKNELKEENGSLETQIEKLHGEIQARVAQSKPDLNVPLHLELEPMEQTNFTGQNLQLHTIDPNLQQGSAVLVVPFRPGLQASFPSPNVTEVTPESTSVVSKPHARYPTSADSWPSQLLGEQPTSS 227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste6g02544 227 MobiDBLite consensus disorder prediction 1 37 - -
Pste6g02544 227 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 31 107 IPR036638 GO:0046983
Pste6g02544 227 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 30 79 IPR011598 GO:0046983
Pste6g02544 227 MobiDBLite consensus disorder prediction 186 227 - -
Pste6g02544 227 PANTHER TRANSCRIPTION FACTOR BHLH47 4 226 - -
Pste6g02544 227 MobiDBLite consensus disorder prediction 1 20 - -
Pste6g02544 227 Coils Coil 76 96 - -
Pste6g02544 227 Gene3D - 24 96 IPR036638 GO:0046983
Pste6g02544 227 Coils Coil 104 124 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste6g02544 Pste-Chr6 12716967 12719526 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste6g02544 26 223 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G47640 48.848 1.80e-56 178
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste6g02544 6 12716967 12719526 Pste6g02544 6 12716967 12719526 ECH