Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste6g02527 atgcaaaatcatgctcgtgccagcttctgcactcaagcaaacgcgcttcttcgcaagaatctaaccttccagaaacggaacgtgaaaacgaacgtaagactggtcctgttcccggtgatactgtgcttgttgctgttctggatccaaagcataatcgacacgcagatcgacaaacccgatttcaaatgcggctgcggcagcggcagcggcagaagcagtgagtccgattgcccggactcagaaaaggtgtgtggtgtccagtattcgaatcccatccaagctgcctcctgcgccattccgaacccccccgaatggccaccgctcatgcaacttccggcgactcccaaccggacaaccaactcctctccttttactctgctcttcaccgcacacaatctctcctttgcacgcaacgtctctgccaacatgtttgggactatgactcacttttctactgatctcttctcttctttggccatgcatctactgggatctgaatcaacgcctgggacaaacaattttgttgaacttgctttctctttgggtctccccatttattatctacaaacaaagtgtacagggagctctccggtctccttttcctcccaggccggagtatacaatgagatcagatgtgcccaggctttaaatttatggcgtaatagttcttctgagatagacagtgagctatataaaggttatgaaagaggtaacaaagaaggacatggcaacgggatagtttcagcttttgattttctaaattcaaatgaaaatagatataatgtcagtatatggtacaactcatcctaccagcgagacagtggaactcgtaatgttttgttgcggattcctcgctctataaacctgatatcaaattcctatctgcagtgtcttcttggacctggagccaaaatgctatttgagtttgtaaaggaaatgccgaagtctgagaccagatttgatattgacgtagcttctcttctaggcagtctgttctttacatgggtcgtcctacaactttttcctgttgttttgacatcactagtatatgagaagcaacaaaaattaagaatcatgatgaaaatgcatggtcttggtgatgggccatattggatgatttcatatggttattttcttgccatatcagtaatctacatgttgtgttttgtgatatttggctcattcttaggattaaaaatcttcacaaccaatgagtacagcatccaatttgtgttttatttcatctatataaacttacaaattgttctggcatttttggtggcttccatattttcaaatgttaagactgctacagtaactgcatatattggtgtctttggaaccgggttgttaggtggctttcttttccaatactttgttcaaaatacatcatttccaagagggtggataattgttatggagttgtatcctggttttgctttatatcgtgggttgtacgagttagcacaattttcctttgaagggagtagttcggggattggtggtataaagtggcaggatctgagtgacaacaccaatggcatgaaagaggtcttaattatcatgtttgctgagtggaaattgatgctttttgctgctttttacattgaccaagtgttgtcaggaagaaaaagtcctcttttcttcttgagaggatgtcaaaaaaagcctcttttccagcaactcgatacccaaatgcaggtgtcaaaagtattatctcaaatggagaaacctgatgtcatccaagagaaggagaaggtggagcagctgctacttgaaccaactattaatcacgcaattgtatgtgacgacctaaaaaaggtctatccagggagggatggaaatccagataaatttgcagtgagagggttgttcctttctgtgcctcaaggggaatgttttggtatgcttggtcctaatggagccgggaagacctcttttatcaatatgatgattggtcgcacaaagccaacctctggtagggcatttgttcaaggcttggacataagaacttgtatggatggaatatatactaccatgggtgtatgcccacaacatgacttgctgtgggaaagcttgacaggtagagagcacctacttttttatggcagactgaaaaatctaaaaggttcagtcttgactcaagcagtagaagaatctttgaagagtctaaacctttttcatggaggagttgctgataaacaagttggaaaatacagtggagggatgaagaggaggcttagtgttgcaatttcattgattggggatcccagagttgtttacatggatgaacctagttccggattagaccctgcctcaagaaaaagcttatggaatgttgtccagcatgcaaaacagaaccgtgcaatcattctcaccacacattccatggaagaggcagaggccttatgtgatcgattgggaatatttgtaaatggtagcttgcagtgcgtaggaaatgcaaagcagctgaaagcaagatatggaggaacctacgtgttcacaatgacaacatcttcgtactatgaaaaggatgtggagaacatggcgcagaaactcaccccaaatgctaaaaagatataccatctctccggtactcagaagtttgagctgccaaaagaggatgttagactagcagatgtattccaagctgttgatgctgcaaagagaaaattcactgtttctgcatggggtttagttgataccacattggaagatgtattcattaaggtagcacgtgaagctcaggaacttgatgctctgtcatag 2769 0.0 MQNHARASFCTQANALLRKNLTFQKRNVKTNVRLVLFPVILCLLLFWIQSIIDTQIDKPDFKCGCGSGSGRSSESDCPDSEKVCGVQYSNPIQAASCAIPNPPEWPPLMQLPATPNRTTNSSPFTLLFTAHNLSFARNVSANMFGTMTHFSTDLFSSLAMHLLGSESTPGTNNFVELAFSLGLPIYYLQTKCTGSSPVSFSSQAGVYNEIRCAQALNLWRNSSSEIDSELYKGYERGNKEGHGNGIVSAFDFLNSNENRYNVSIWYNSSYQRDSGTRNVLLRIPRSINLISNSYLQCLLGPGAKMLFEFVKEMPKSETRFDIDVASLLGSLFFTWVVLQLFPVVLTSLVYEKQQKLRIMMKMHGLGDGPYWMISYGYFLAISVIYMLCFVIFGSFLGLKIFTTNEYSIQFVFYFIYINLQIVLAFLVASIFSNVKTATVTAYIGVFGTGLLGGFLFQYFVQNTSFPRGWIIVMELYPGFALYRGLYELAQFSFEGSSSGIGGIKWQDLSDNTNGMKEVLIIMFAEWKLMLFAAFYIDQVLSGRKSPLFFLRGCQKKPLFQQLDTQMQVSKVLSQMEKPDVIQEKEKVEQLLLEPTINHAIVCDDLKKVYPGRDGNPDKFAVRGLFLSVPQGECFGMLGPNGAGKTSFINMMIGRTKPTSGRAFVQGLDIRTCMDGIYTTMGVCPQHDLLWESLTGREHLLFYGRLKNLKGSVLTQAVEESLKSLNLFHGGVADKQVGKYSGGMKRRLSVAISLIGDPRVVYMDEPSSGLDPASRKSLWNVVQHAKQNRAIILTTHSMEEAEALCDRLGIFVNGSLQCVGNAKQLKARYGGTYVFTMTTSSYYEKDVENMAQKLTPNAKKIYHLSGTQKFELPKEDVRLADVFQAVDAAKRKFTVSAWGLVDTTLEDVFIKVAREAQELDALS 922
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste6g02527 922 Pfam ABC-2 family transporter protein 244 515 IPR013525 GO:0016020|GO:0140359
Pste6g02527 922 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 600 837 IPR003439 GO:0005524
Pste6g02527 922 PANTHER ATP-BINDING CASSETTE TRANSPORTER SUBFAMILY A ABCA 571 917 IPR026082 GO:0016020|GO:0055085|GO:0140359
Pste6g02527 922 Gene3D - 592 868 IPR027417 -
Pste6g02527 922 FunFam ABC transporter A family member 7 589 865 - -
Pste6g02527 922 ProSitePatterns ABC transporters family signature. 739 753 IPR017871 GO:0005524|GO:0016887
Pste6g02527 922 CDD ABC_subfamily_A 604 825 - -
Pste6g02527 922 SMART AAA_5 630 814 IPR003593 GO:0016887
Pste6g02527 922 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 600 833 IPR027417 -
Pste6g02527 922 Pfam ABC transporter 625 766 IPR003439 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste6g02527 Pste-Chr6 12520269 12533401 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste6g02527 604 824 Calmodulin-binding Proteins AT2G36910 24.891 2.18e-13 72.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste6g02527 6 12520269 12533401 Pste6g02527 6 12520269 12533401 ECH