Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste6g02516 ATTTGATCCTTTAATACTTAAGAGGTATCTCTTCACCCTGTCTCTCTTTTCCCTTTCTTTCTTTGTTTTGTTCTCTCTCCCGAGCGAGGCCTTTTAACAGTAACTCAACAATCAAGAGGATCAGATCCATAGGAAGTTTATCTGTCCATCACCAAAACCGCGACTGATCAGTCAATCCCATCAATCAAATCAAATCATCATCAGAAAGAAAAGGGAATCAACAAAAAGAGGAACAACAACATGTCCTCCTCATCCACTTCCTTTTCACCGGACCAACACCTCTCTCCCTCCGACCAGCTCTGCTATGTCCATTGCAACTTCTGTGACACTGTCCTCGCGGTGAGTGTTCCTTGCACCAGTTTGTTCAAGACTGTCACTGTGAGATGTGGTCATTGCACCAATCTTCTCTCTGTCAACATGCGTGGACTGCTTCTTCCTAGTACCAATCAGCTTCACCTTGGTCACACTTTTTTCACTCCTCAAAATCTTCTGGAGGAGATTCGAAATGCTGCACCTTCAACTAACATGATGATGAATCAGCTGCCTAACCCTAATGATTTGGTCATGAGCACCATGCGAGGGGGCCCTGAAGAAACTCCTAAACCTCCTTCAGCTAATAGACATCCTTCTTATACCGCCAAAGAAAAGCTAGAGGAAAAGAAAAGTAAACTCGATTCCATTCAGTCTCCAGAAAAGAGACAGAGAGTTCCATCTGCTTACAACCGCTTCATCAAGGATGAGATTCAACGCATCAAAGCTGGAAATCCTGATATAAGCCACAGAGAGGCTTTTAGTGCAGCTGCTAAGAATTGGGCCCACTTTCCACACATTCATTTCGGACTTATGCCTGATCATCAACCCGTGAAGAAAGCTAATGTTCGTCAGGAACCAGAGGATGTGCTTATCAAAGATGGGTTTTTTGCACCGGCTAATGTTGGTGTCTCTCCCTACTAGAGGAACTGTTTAATATTGCAGAGCATTGAGTGTTACTCATCTCTCTAGTTAAGTAATTGTACTAGGACTTTGTCTTATGCATATTAATGTTGTGCACTTGTATTAGTACTTGTTAGTGTTAAAAGTTGTTAGTTTATGTTACAATCAATGGTGGAAGGGAGTTCTGACGAAGCTAGATTAGTTCTTCAAGATAATTTATTTCTTGTTGAACTGGTCCCGGAATGAATGAAGGTTTTCGGAATGTAGAAAGCTCATGTTACAGTATTTTGAAGTTAATTTTCTTAATTCTAATATTTGTCTTGGTAAATGTGTTCTATATTGTAATAGCTCTCG 1287 0.411 MSSSSTSFSPDQHLSPSDQLCYVHCNFCDTVLAVSVPCTSLFKTVTVRCGHCTNLLSVNMRGLLLPSTNQLHLGHTFFTPQNLLEEIRNAAPSTNMMMNQLPNPNDLVMSTMRGGPEETPKPPSANRHPSYTAKEKLEEKKSKLDSIQSPEKRQRVPSAYNRFIKDEIQRIKAGNPDISHREAFSAAAKNWAHFPHIHFGLMPDHQPVKKANVRQEPEDVLIKDGFFAPANVGVSPY 237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste6g02516 237 Pfam YABBY protein 16 201 IPR006780 GO:0007275
Pste6g02516 237 CDD HMG-box_SF 155 191 - -
Pste6g02516 237 FunFam Axial regulator YABBY 146 218 - -
Pste6g02516 237 SUPERFAMILY HMG-box 146 195 IPR036910 -
Pste6g02516 237 PANTHER PROTEIN YABBY 6-RELATED 1 211 IPR006780 GO:0007275
Pste6g02516 237 MobiDBLite consensus disorder prediction 131 150 - -
Pste6g02516 237 Gene3D High mobility group box domain 133 197 IPR036910 -
Pste6g02516 237 MobiDBLite consensus disorder prediction 111 155 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste6g02516 Pste-Chr6 12440689 12443702 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste6g02516 27 235 C2C2-YABBY Transcription Factor Family AT4G00180 56.195 1.41e-69 211
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-YABBY Pste6g02516 YABBY 4.2e-71 CL0114
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste6g02516 6 12440689 12443702 Pste6g02516 6 12440689 12443702 ECH