LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pste6g02515	atggagcttgctcctgatcagagatctggtgacggaggcagtggactcaaggaagaaaagaccagtgttggtgatgatgaaggtcgtcataaacaagagattatggtccaggaacaacccgtggctaataccgaaacctcgatacaggagggacgacctagcgtatccctaaacaaaaaggaaaaggttgatgatcagcttgagacaaccaaagctgaaattggtgtggtgagggaagaaaatcaacggttaaagatgtgtttgaacaaaataatgaatgaatatcgggcactagaaatgcaatttcaagacatagttaagcaaggaaccaaaaagaaggttggtcaaggaaatgatattaaccctcaagaaatgttagaggaatcggatcttgtttccctgagtcttggaagagttccgagcaatccaagaaatgatgaaaaaatcaaagtttctaaagcattgaaggatgatgatgaagggtttcacgaagatttggctcttggactagagtgcaaatttgagacatcaaagtcaggaagcacaacagaagctgtgcctaatccaagcccagaaaatagttgtgaagtaccaaaggaagaagctggggacgctctcaagacaatgagggagtcagaagatgaagttgctcaacaaaatcaaaatcctacaaagaaaccccgagtttgcgttagagctagatgtgacactccaacaatgaatgatggatgccaatggaggaaatatggacaaaagattgcaaagggtaatccttgccctcgagcttactatcgttgcacaattgcaccatcatgcccagttagaaaacaggtgcaaagatgtgctgatgacatgtccattttaatcaccacctacgaagggacccacaaccatactcttccaccttcagctacggccatggcatccacaacttctgcagctgcttccatgctcttgtctggttcatcaacctctcaatctgcctcgatgccttcaacaatcaccgcagctactaccaatctccaaggcctcaacttctatctatcagatggttccaaaccaaggccattatacctctctaaccctgcactatcatcttcaccttcacatccaaccatcactcttgacctcacttcacacccatcttcttcctcttcatctccctttgtcagattcaaccaacccagatactcctcttcctctagcctaagcttcaaccattcctcagaaaccaacaatgcattgtcttggagcaacggattgttcctcaacaataatactcacctatatagtaacaataatagaaacaacgtccttagcagtgtaaactttggaagacaacaaatggaaaacatgtaccaatccttcatgcaaaagaacaacaactcaagcgttgctcaaggtggtgtgccagctgatactatatctgcagcaacgaaagttatcacagcagaccccacttttcagtcagctttggcagcagcgcttacttcatttattggtggcggtgttggaaatcaaggtgctaatgttggagaaagtttgagtttgggtcagaaaatgaagtgtggtgaggtgtttccagcgtctaattcttcttctaccttgtctgtttcaacttccaaagtcaatggttgtgcatcaagcttcttgaacaaaacgcccgcgaatacacagacgaaaagtttgatgtttctgccgccgtctttgccgttttctacccctaaaagtgcttctgcatctcctgccgaaaatagcgacaccaccaattaa	1773	0.0	MELAPDQRSGDGGSGLKEEKTSVGDDEGRHKQEIMVQEQPVANTETSIQEGRPSVSLNKKEKVDDQLETTKAEIGVVREENQRLKMCLNKIMNEYRALEMQFQDIVKQGTKKKVGQGNDINPQEMLEESDLVSLSLGRVPSNPRNDEKIKVSKALKDDDEGFHEDLALGLECKFETSKSGSTTEAVPNPSPENSCEVPKEEAGDALKTMRESEDEVAQQNQNPTKKPRVCVRARCDTPTMNDGCQWRKYGQKIAKGNPCPRAYYRCTIAPSCPVRKQVQRCADDMSILITTYEGTHNHTLPPSATAMASTTSAAASMLLSGSSTSQSASMPSTITAATTNLQGLNFYLSDGSKPRPLYLSNPALSSSPSHPTITLDLTSHPSSSSSSPFVRFNQPRYSSSSSLSFNHSSETNNALSWSNGLFLNNNTHLYSNNNRNNVLSSVNFGRQQMENMYQSFMQKNNNSSVAQGGVPADTISAATKVITADPTFQSALAAALTSFIGGGVGNQGANVGESLSLGQKMKCGEVFPASNSSSTLSVSTSKVNGCASSFLNKTPANTQTKSLMFLPPSLPFSTPKSASASPAENSDTTN	590

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pste6g02515	590	PANTHER	WRKY TRANSCRIPTION FACTOR 36-RELATED	50	510	IPR044810	GO:0003700
	Pste6g02515	590	Pfam	WRKY DNA -binding domain	241	298	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Pste6g02515	590	MobiDBLite	consensus disorder prediction	178	205	-	-
	Pste6g02515	590	SMART	WRKY_cls	240	300	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Pste6g02515	590	FunFam	probable WRKY transcription factor 31	225	302	-	-
	Pste6g02515	590	Gene3D	WRKY domain	225	302	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
	Pste6g02515	590	ProSiteProfiles	WRKY domain profile.	235	301	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Pste6g02515	590	MobiDBLite	consensus disorder prediction	363	388	-	-
	Pste6g02515	590	MobiDBLite	consensus disorder prediction	12	34	-	-
	Pste6g02515	590	MobiDBLite	consensus disorder prediction	1	63	-	-
	Pste6g02515	590	Coils	Coil	81	108	-	-
	Pste6g02515	590	MobiDBLite	consensus disorder prediction	37	54	-	-
	Pste6g02515	590	SUPERFAMILY	WRKY DNA-binding domain	233	301	IPR036576	GO:0003700\|GO:0006355\|GO:0043565

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pste6g02515	Pste-Chr6	12435759	12442075	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pste6g02515	63	504	WRKY Transcription Factor Family	AT1G18860	41.061	1.10e-80	261

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	WRKY	Pste6g02515		WRKY	8.5e-24	CL0274

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Pste5g00920	5	5992580	5996429	Pste6g02515	6	12435759	12442075	ECH
	Pste1g00854	1	2637609	2639978	Pste6g02515	6	12435759	12442075	ECH
	Pste6g02515	6	12435759	12442075	Pste6g02515	6	12435759	12442075	ECH
	Pste1g00854	1	2637609	2639978	Pste6g02515	6	12435759	12442075	PCT