Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste6g02497 TATTCATGGAACGAGGTTAAGCTTTGGTGCAACCAAACCCCAAACCCTCAACCGTGTGAGTATTTCTTGAGCAATAACCCAACTTATCAATACAAACCCATCAAGCAAAAATCTGATTTTTTCAAGATTTCATTGCAACTCGTTCAAGAGCGTGCACTCAAAGGCCATGCAAACACTCTCTCACTTGGCTCAAAATGCCGAAACCCACTTGAAAGAGTTGCTTGGGCTGATTGCGTTGAGCTTTATGAGCAAACTATTCGTAAACTCAATGAAACCTTGGACCCTAATACCAAATGCTCCCAAGTTGATGCCCAAACATGGCTTAGCACAGCTCTCACCAACCTTGAGACATGCAAAGCTGGATTCTACGAGCTTGGTGTTCAAGACTATGTTCTCCCTTTGATGTCCAACAATGTCACTAAGTTGTTGAGCAACACCTTGGCTCTTAACAAAGTTCAATATCAACAACCAGTTTACAAAGATGGATTCCCAACATGGGTGAAGCCTGGTGATAGAAAGTTATTGCAAGCTTCTTCACCTGCTTCTAGAGCCAACGTGGTGGTAGCAAAAGATGGATCTGGAAGGTTCACAACCGTAAGTGCAGCTGTAAATGCTGCTCCAAAGAGTGGAAGTAGAAGGTATGTGATATATGTGAAGGCAGGGGTATACAATGAACAAGTTGAGATAAAAGCAAAGAATATAATGCTGCTTGGAGATGGTATAGGAAAGACCATTATCACAGGTAGCAAAAGTGTTGGAGGTGGCACCACAACCTTCCGTTCAGCCACTGTTGCTGTAGTTGGGGACGGATTTATTGCTCAAGGTATCACATTTAGGAACACTGCTGGTGCAAAAAATCATCAAGCTGTAGCATTGCGTTCTGGATCAGATTTGTCAGTGTTCTACAAATGCAGTTTTGAGGGTTACCAAGATACACTATATGTCCACTCTGAGAGGCAATTCTATAGGGAATGTGACATTTACGGCACAGTTGACTTCATATTTGGAAATGCTGCTGTTGTGTTGCAAAACTGTAACATATTTGCAAGAAACCCTCCAAACAAAGTGAACACAATCACTGCCCAAGGCCGAACAGATCCAAACCAAAACACAGGAATTTCCATTCACAATTGTAGAGTGACAGCGGCCTCTGATTTGAGAGCAGTGCAAAGCTCAGTGAGGACATATCTTGGAAGGCCATGGAAGCAATATTCAAGAACAGTATTCATGAAGACATATCTTGATGGTTTGATAAATCCATCGGGTTGGATGGAATGGAGTGAGTACATGAACACTGGTCCAGGTTCTTCTACTGCTAGTCGAGTTAACTGGCCAGGTTATCGGGTGATAACTAGTGCTTCTGAAGCCTCAAAGTTCACAGTTGCAAATTTTATTGCAGGAAACGCATGGTTACCTGCCACCAAAGTGCCTTTTACCCCTACTCTG 1446 0.4288 YSWNEVKLWCNQTPNPQPCEYFLSNNPTYQYKPIKQKSDFFKISLQLVQERALKGHANTLSLGSKCRNPLERVAWADCVELYEQTIRKLNETLDPNTKCSQVDAQTWLSTALTNLETCKAGFYELGVQDYVLPLMSNNVTKLLSNTLALNKVQYQQPVYKDGFPTWVKPGDRKLLQASSPASRANVVVAKDGSGRFTTVSAAVNAAPKSGSRRYVIYVKAGVYNEQVEIKAKNIMLLGDGIGKTIITGSKSVGGGTTTFRSATVAVVGDGFIAQGITFRNTAGAKNHQAVALRSGSDLSVFYKCSFEGYQDTLYVHSERQFYRECDIYGTVDFIFGNAAVVLQNCNIFARNPPNKVNTITAQGRTDPNQNTGISIHNCRVTAASDLRAVQSSVRTYLGRPWKQYSRTVFMKTYLDGLINPSGWMEWSEYMNTGPGSSTASRVNWPGYRVITSASEASKFTVANFIAGNAWLPATKVPFTPTL 482
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste6g02497 482 CDD PMEI-like_3 8 151 - -
Pste6g02497 482 NCBIfam pectinesterase inhibitor domain 4 151 IPR006501 GO:0004857
Pste6g02497 482 Pfam Pectinesterase 185 468 IPR000070 GO:0030599|GO:0042545
Pste6g02497 482 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 5 152 IPR035513 -
Pste6g02497 482 FunFam Pectinesterase 1 152 - -
Pste6g02497 482 FunFam Pectinesterase 179 482 - -
Pste6g02497 482 ProSitePatterns Pectinesterase signature 1. 210 229 IPR018040 -
Pste6g02497 482 PANTHER PECTINESTERASE 6 474 - -
Pste6g02497 482 Pfam Plant invertase/pectin methylesterase inhibitor 5 149 IPR006501 GO:0004857
Pste6g02497 482 Gene3D - 180 482 IPR012334 -
Pste6g02497 482 SMART PMEI_2 1 149 IPR006501 GO:0004857
Pste6g02497 482 Gene3D Invertase/pectin methylesterase inhibitor family protein 2 152 IPR035513 -
Pste6g02497 482 SMART complete 218 396 IPR006633 -
Pste6g02497 482 ProSitePatterns Pectinesterase signature 2. 327 336 IPR033131 -
Pste6g02497 482 SUPERFAMILY Pectin lyase-like 179 481 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste6g02497 Pste-Chr6 12317073 12318777 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste6g02497 1 482 Carbohydrate Esterase AT2G45220 68.826 0.0 706