Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste6g02494 ATGACAACTTTTCCCTGCTTGTTCTTCCTAACACTGATTGTTCATTTTCTACTCTCTTGTTACGTCTCTAGTTATTCTTACAATGATGTTAAGGTTTGGTGCAACCAAACCCCAAACCCTCAACCGTGTGAGTATTTATTGAGAAACAACCCCTCTCACCAATACAAACCCATCAAGCAAAAGTCTGATTTCTTTAAGCTTTCAGTGCAACTTGCTCAAGAACGTGCTCTCAATGGCCATGCAAACACACTCTCACTTGGCCCAAAGTGCCGTAACCAACGTGAAACAGCTGCTTGGGCTGATTGCGTTGAGCTTTATGAGAAAACCATTCGAAAACTGAACAAAACCTTAGACTCAAACACCAAGTGGTCCCAAGTTGATACCCAAACATGGCTTAGCACGGCTCTGACCAACCTGGAGACATGCAAAGCAGGGTTCTACGAGCTTGGAGTTGAAGACTATGTTCTGCCTTTGATGTCCAACAATGTCACTAAGTTGTTGAGCAACACCTTGGCACTTAACAAAGTTCAATATGAAGAGGAAGAGCCAAGTTACAAAGATGGGTTCCCAAAATGGGTGAAGGCTGGAGATAGAAAGTTGTTGCAAGCTTCTTCTGCAGCTTCTAAGGCCAACGTAGTGGTGGCAAAAGATGGGTCTGGAAAGTACACAACTGTGAGTGAAGCCGTAAATGCTGCACCAAAGAGTAGCAGTGGAAGGTATGTGATATATGTGAAGGGTGGTGTGTACAATGAGCAAGTTGAGATAAGAGCAAACAACATAATGTTGGTGGGAGATGGTATTGGAAGGACCATAATCACAGGTAGCAAAAGCGTTGGAGGGGGCGCCACAACATTCCGTTCAGCCACTGTTGCTGTTGTTGGAGATGGGTTTATAGCACAAGGCATCACTTTCAGAAACACTGCTGGAGCAGCAAACCACCAAGCTGTGGCACTGCGTTCAGGATCAGACCTATCAGTGTTTTATAGATGCAGCTTTGAGGGTTACCAAGACACGCTAAACCCTCCAAACAAAGTGAACACGGTGACTGCTCAAGGAAGAACGGATCCAAACCAGAACACAGGGATTTCGATTCACAATTCAAAGGTGACAGCAGCCTCAGATTTGGAAGGGTCAGTGAGGACATACCTAGGAAGGCCATGGCAACAATATTCAACAACAGTATTCATGAAGACATATCTTGATGGTTTGATAAATCCACAGGGTTGGATGGAATGGAGTGGTAACTTTGCATTAAACACATTGTATTATGGAGAGTACATGAACACAGGACCAGGTTCATCAACTTCAAACAGGGTTAAATGGTCAGGATATCATGTCATCACAACTGCTGCTGAAGCCTCTAAATTCACCGTTGCTAATTTCATTTCTGGAAACTCTTGGTTGCCCGCCACCACTGTGCCTTTCACCTCCTCTCTTTAA 1440 0.4431 MTTFPCLFFLTLIVHFLLSCYVSSYSYNDVKVWCNQTPNPQPCEYLLRNNPSHQYKPIKQKSDFFKLSVQLAQERALNGHANTLSLGPKCRNQRETAAWADCVELYEKTIRKLNKTLDSNTKWSQVDTQTWLSTALTNLETCKAGFYELGVEDYVLPLMSNNVTKLLSNTLALNKVQYEEEEPSYKDGFPKWVKAGDRKLLQASSAASKANVVVAKDGSGKYTTVSEAVNAAPKSSSGRYVIYVKGGVYNEQVEIRANNIMLVGDGIGRTIITGSKSVGGGATTFRSATVAVVGDGFIAQGITFRNTAGAANHQAVALRSGSDLSVFYRCSFEGYQDTLNPPNKVNTVTAQGRTDPNQNTGISIHNSKVTAASDLEGSVRTYLGRPWQQYSTTVFMKTYLDGLINPQGWMEWSGNFALNTLYYGEYMNTGPGSSTSNRVKWSGYHVITTAAEASKFTVANFISGNSWLPATTVPFTSSL 479
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste6g02494 479 ProSitePatterns Pectinesterase signature 1. 236 255 IPR018040 -
Pste6g02494 479 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 29 176 IPR035513 -
Pste6g02494 479 Pfam Pectinesterase 211 339 IPR000070 GO:0030599|GO:0042545
Pste6g02494 479 Pfam Pectinesterase 343 465 IPR000070 GO:0030599|GO:0042545
Pste6g02494 479 Gene3D Invertase/pectin methylesterase inhibitor family protein 25 176 IPR035513 -
Pste6g02494 479 FunFam Pectinesterase 25 176 - -
Pste6g02494 479 NCBIfam pectinesterase inhibitor domain 10 175 IPR006501 GO:0004857
Pste6g02494 479 SUPERFAMILY Pectin lyase-like 205 476 IPR011050 -
Pste6g02494 479 Gene3D - 343 479 IPR012334 -
Pste6g02494 479 Gene3D - 205 342 IPR012334 -
Pste6g02494 479 CDD PMEI-like_3 33 175 - -
Pste6g02494 479 SMART PMEI_2 25 173 IPR006501 GO:0004857
Pste6g02494 479 PANTHER PECTINESTERASE 17 339 - -
Pste6g02494 479 Pfam Plant invertase/pectin methylesterase inhibitor 30 173 IPR006501 GO:0004857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste6g02494 Pste-Chr6 12300558 12302198 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste6g02494 7 479 Carbohydrate Esterase AT2G45220 59.846 0.0 621