Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste6g02487 ATGGCTACAACCACCCTTTGCCTCCAAGAAACCGATGTGCTAAAAATGGCCCAAAACCATGTTTCTCAAGCCATGAATTGGGTTGGAGACTCTTTGAATTTGCATGGCTTGGAAAGTCTAACCCTTTCTGATCAAAATAATGCTATTGCTCTTAGAGACTGTGCCAAGCTCTATGAGGAGAGTGAGTCTAGGCTCTCTCACATGATGTCTGAAGAGAGTATCTACTCCAAAGAAGATGCACTCACATGGATAAGTGCTGTGATGACAAATCATAGGACTTGTTTGGATGGATTGAAACAAGAGGGGTATGCTAAAGATCAGATTTTTGATAGAAATTTGACCATGGTGCTTAAGCAAGCTCTTGTTTTGTATTCAAAGAACAAAGGCAAAGCTGGCAAAGGACCACCTGATCAGGGAACAACATCCAAATCCAATACTGGTCTTTTAGAATCATGGAGTGAAGCAACCCATAACAAAGACTTCACAGTGGCAAATGATGGTTCAGGGACCCACAAAACAATACAAGAAGCGGTGAATGCAGTAGCTGCAATGGGACACAACCGTCCTGCAAGAGCAGTCATATATATAAAATCAGGGGTATACAATGAGAAGGTGGAAATTGGACAAAAACTTCATAATGTGATGTTTGTAGGAGATGGCATAGACAAAACTATCATCACTGGCAGTAGAAATGTTGCTCAAGGTTCTACAACTCTTAGATCAGCCACACTTGATGTATCAGGGGATGGATTTTGGGCCAGAGACATGACATTTGAGAACACTGCAGGACCAGAAAAACACCAAGCAGTGGCACTAAAGGTTAGTTCAGACTTATCAGTCTTCTATAGGTGCAGCTTCAAAGCTTATCAGGACACTCTTTATGTACACTCAAATCGTCAATTCTACCGAGACTGTCACGTATATGGCACGGTAGATTTCATATTTGGGGATGCCACAGTGGTGCTACAAAACTGTGACATCTTTGTGAGGAAGCCAATGAGCCACCAATCCAACTTCATCACAGCACAAGGAAGAGATGACCCTAACAAGAACACTGGAATTTCAATCCAAAACTGCTGGGTTAAGCCATCACCTGAGTTTGAGACACTTAAGAATTCTTACAAGACATTCCTAGGTAGGCCTTGGAAGAAGTATTCTAGGACAGTGTTTCTCAAAACTGATTTGGATGGTTTCATTCACCCTAAAGGGTGGAGTGAATGGACTGGAAATTTTGCACTCTCAACTTTGTACTATGGAGAGTATATGAACACTGGTAATGGTGCCTATACACAGAATAGGGTGAATTGGCCTGGTTTTCATGTGATGAGAAGTGCCACTGAGGCCTCACCCTTCACAGTGAACCGGTTTCTCCAAGGTGAAAGGTGGATTCCTGCCACAGGGGTACCATTCTCTTCTGGAATTTAA 1425 0.4253 MATTTLCLQETDVLKMAQNHVSQAMNWVGDSLNLHGLESLTLSDQNNAIALRDCAKLYEESESRLSHMMSEESIYSKEDALTWISAVMTNHRTCLDGLKQEGYAKDQIFDRNLTMVLKQALVLYSKNKGKAGKGPPDQGTTSKSNTGLLESWSEATHNKDFTVANDGSGTHKTIQEAVNAVAAMGHNRPARAVIYIKSGVYNEKVEIGQKLHNVMFVGDGIDKTIITGSRNVAQGSTTLRSATLDVSGDGFWARDMTFENTAGPEKHQAVALKVSSDLSVFYRCSFKAYQDTLYVHSNRQFYRDCHVYGTVDFIFGDATVVLQNCDIFVRKPMSHQSNFITAQGRDDPNKNTGISIQNCWVKPSPEFETLKNSYKTFLGRPWKKYSRTVFLKTDLDGFIHPKGWSEWTGNFALSTLYYGEYMNTGNGAYTQNRVNWPGFHVMRSATEASPFTVNRFLQGERWIPATGVPFSSGI 474
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste6g02487 474 SMART PMEI_2 2 123 IPR006501 GO:0004857
Pste6g02487 474 Gene3D Invertase/pectin methylesterase inhibitor family protein 9 126 IPR035513 -
Pste6g02487 474 ProSitePatterns Pectinesterase signature 2. 307 316 IPR033131 -
Pste6g02487 474 PANTHER PECTINESTERASE 16 464 - -
Pste6g02487 474 FunFam Pectinesterase 154 474 - -
Pste6g02487 474 SUPERFAMILY Pectin lyase-like 157 473 IPR011050 -
Pste6g02487 474 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 14 115 IPR035513 -
Pste6g02487 474 Gene3D - 154 474 IPR012334 -
Pste6g02487 474 Pfam Plant invertase/pectin methylesterase inhibitor 15 107 IPR006501 GO:0004857
Pste6g02487 474 Pfam Pectinesterase 160 460 IPR000070 GO:0030599|GO:0042545
Pste6g02487 474 NCBIfam pectinesterase inhibitor domain 12 114 IPR006501 GO:0004857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste6g02487 Pste-Chr6 12259453 12262789 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste6g02487 10 474 Carbohydrate Esterase AT3G60730 55.311 0.0 581