Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste6g02483 atgagttttgacaatggagattactacttttaccaaccccagaagaagcgtcgtctctctaccaaccaggttcagtttcttgagaagagtttcgaccaagagaacaagcttgaacccgagaggaaatccaagctagccaaagaccttggtttgcagccacgacaagtcgctatctggttccagaaccgtcgtgctcgctggaagaccaaacagctcgagcaggattatcacactctccatcatacctaccagactctcaaggccaactatgacatcctcctcaaggagaaacaaaacttacaagctcaggtggccagtctgacagagaaggtagtttcaaggggtgagagtgaagcaaaggaagaagctgaaaaaagggaatccaaagtgtgttgtaccctgcaggaagatattagttggggcaggaatactgacattctggattcaaatagccctgatggagttcactctccccatgcgcatgctgattcttctcatgtttttgagcctgatcattcggacctgtcacaagacgaagaagatgacctcaccaacactgttctctacccttctcacctcttttccaaacttgaacatctccattactctcaccaaacttgttctaattttggatttggatttcccgacgaagatcaacccctttggacctggccttactaa 681 0.0 MSFDNGDYYFYQPQKKRRLSTNQVQFLEKSFDQENKLEPERKSKLAKDLGLQPRQVAIWFQNRRARWKTKQLEQDYHTLHHTYQTLKANYDILLKEKQNLQAQVASLTEKVVSRGESEAKEEAEKRESKVCCTLQEDISWGRNTDILDSNSPDGVHSPHAHADSSHVFEPDHSDLSQDEEDDLTNTVLYPSHLFSKLEHLHYSHQTCSNFGFGFPDEDQPLWTWPY 226
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste6g02483 226 PRINTS Lambda-repressor HTH signature 50 66 IPR000047 GO:0003677
Pste6g02483 226 PRINTS Lambda-repressor HTH signature 41 50 IPR000047 GO:0003677
Pste6g02483 226 ProSiteProfiles 'Homeobox' domain profile. 10 70 IPR001356 GO:0003677
Pste6g02483 226 SUPERFAMILY Homeodomain-like 13 81 IPR009057 -
Pste6g02483 226 Pfam Homeobox associated leucine zipper 70 111 IPR003106 GO:0006355|GO:0043565
Pste6g02483 226 Coils Coil 83 110 - -
Pste6g02483 226 MobiDBLite consensus disorder prediction 143 181 - -
Pste6g02483 226 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 12 159 IPR045224 GO:0003700
Pste6g02483 226 FunFam homeobox-leucine zipper protein ATHB-6-like 18 64 - -
Pste6g02483 226 Pfam Homeodomain 15 68 IPR001356 GO:0003677
Pste6g02483 226 ProSitePatterns 'Homeobox' domain signature. 45 68 IPR017970 GO:0000981|GO:0006355
Pste6g02483 226 Gene3D - 10 78 - -
Pste6g02483 226 MobiDBLite consensus disorder prediction 159 173 - -
Pste6g02483 226 CDD homeodomain 13 71 IPR001356 GO:0003677
Pste6g02483 226 SMART HOX_1 13 74 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste6g02483 Pste-Chr6 12241139 12242592 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste6g02483 13 117 Homeobox Transcription Factor Family AT3G01470 63.810 1.09e-41 141
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Pste6g02483 Homeodomain 9e-17 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste6g02483 6 12241139 12242592 Pste6g02483 6 12241139 12242592 ECH