Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste6g02441 TTACTATTGGTGGATCTTATATTTGGTACCTTCTTTTATGCTTTGTTCCAACAAGGTGTTATTGCTAACACCATTGCATCTTCTAATTTCTCATCCAGAAATGAGGAACAAGAGGCTTTGCTTCAGAGCAAATGGGGAGGTCAAAATATCTCAGAATATTGTAACTGGAATGGTATTCGTTGTAATGAAGGTCAAAGTGTTACACAGATTTCAACCAGGAAATATTTTTACGTTCCTCCAACAGAAGCTTATATTCAGAATTTCAATATGACTGCATTCCCTAATTTAATCCATTTAGATCTTAGTGGATTGGGACTCAAAGGAAAAATCCCCACTGAAATAAGCTTTCTTAAAAAGCTTATCTATCTTGATCTGTCCTCTAATTGCCTTCAATATGAGTTGCCTGGCTCTATTTCAAGTCTCACTCAACTTGAGACACTTAATATTTCTAACAATTTTCTTACTGGTGTGATCCCTCCTACTTTGGGTCAACTGAAGAATTTGAACAAACTCTCCCTTGATTCAAACCAAATTGAAGGCTACATTCCTGCAGAACTAGGCAACTTAAAAGATTTAGTGTGGTTAATTCTTTCAAATAACTCACTCAAGGGCTCAATTCCTTCTACTTTAGAGCACCTGATCCATCTCAAAGTATTGGATCTTTCTCATAATAAGATTTTTGGTATTATACCTGAGGGGATATCTGCACTAATTCAACAAACAAATGTTCACCAATCTCGGAATCAAATATCTGATATTTCCAACAATCAGCTAGAGGGTCCTATTCCATATGGTGTTCTGAACCATTGTAGTTATGTGCAGCTAAGCAACAACTCTTTAAATGGAAGCATTCCTCCTCAAATAGGCAATATTTCATATCTAGATCTTAGTTATAATGACCTCACAGGCAGCATACCTGAGAGACTCCAATCTGTGCCTCACCTTAATTTGTCTTACAATTCCTTTAATGATTTGGATAAAGATTTTTGTGGTTTTCCAAAAGATTCATTAATTGGTAATAAGGGTTTCCAATATTCATGCTCTTCTGATACTGGTATTTTTTTAGTAATGATAATTTTCTGTTCTACCGTCAATGGCATGGTCTTTTCAATATTATGTTGGGGAATTAATGTCTTTTGCCCCCCTCCTAATGGGTTTGGAAATGAGGAAAGAAGAAAAAATGGAGACATGCTTTCAATTTGGAACTATGATGGTAAAATTGCTTTTGAGGACATAATTAAAGCCACAGAAGACTTTGATATCAGGTATTGCATAGGAACAGGTGCTTGTGGAAGTGTGTACAAAGCACTACTTCCCAGTGGCAGAATTGTTGCACTGAAAAAGCTTCATGCAGAATCTGAAAATCCATCCTTTTACAAGAGCTTTTGCAATGAGACCAAGATCCTGACAGAAATTCGCCATCGTAACATTATCAAACTTTATGGCTTTTGTTTGCATAACAAGGGTATGTTTTTGGTGTATGAGTACATGGAAAGGGGAAGCTTATTTTATAACTTATCTATTGATGTTGAAGCTCAACAGTTGAGTTGGAGTAAGAGGATAAATATTGTGAAAGGGATAGCCTATGGCTTGGCTTACATGCACCATGATTGTATTCCACCCATTGTTCATCGAGACATAAGCAGTAACAATATTTTGTTGAACTCAGAGTTACAAGCTTTTGTCTCAGACTTTGGCACGGCAAGACTTCTTGATTCATCAAATCAAACTCTTCTTGCTGGTACTTATGGATATGTTGCTCCAGAATTGGCTTACACCTTGACAGTGACTACAAAATGTGATGTTTATAGCTATGGAGTACTGGTTTTGGAAACAATGATGGGTAAACATCCAGCTGAATTTATTTCTTCTTTATCAGAACCATCCACTCAAAACAAGAAGCTGAAAGATATA 1914 0.3626 LLLVDLIFGTFFYALFQQGVIANTIASSNFSSRNEEQEALLQSKWGGQNISEYCNWNGIRCNEGQSVTQISTRKYFYVPPTEAYIQNFNMTAFPNLIHLDLSGLGLKGKIPTEISFLKKLIYLDLSSNCLQYELPGSISSLTQLETLNISNNFLTGVIPPTLGQLKNLNKLSLDSNQIEGYIPAELGNLKDLVWLILSNNSLKGSIPSTLEHLIHLKVLDLSHNKIFGIIPEGISALIQQTNVHQSRNQISDISNNQLEGPIPYGVLNHCSYVQLSNNSLNGSIPPQIGNISYLDLSYNDLTGSIPERLQSVPHLNLSYNSFNDLDKDFCGFPKDSLIGNKGFQYSCSSDTGIFLVMIIFCSTVNGMVFSILCWGINVFCPPPNGFGNEERRKNGDMLSIWNYDGKIAFEDIIKATEDFDIRYCIGTGACGSVYKALLPSGRIVALKKLHAESENPSFYKSFCNETKILTEIRHRNIIKLYGFCLHNKGMFLVYEYMERGSLFYNLSIDVEAQQLSWSKRINIVKGIAYGLAYMHHDCIPPIVHRDISSNNILLNSELQAFVSDFGTARLLDSSNQTLLAGTYGYVAPELAYTLTVTTKCDVYSYGVLVLETMMGKHPAEFISSLSEPSTQNKKLKDI 638
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste6g02441 638 ProSiteProfiles Protein kinase domain profile. 419 638 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pste6g02441 638 Gene3D Phosphorylase Kinase; domain 1 387 496 - -
Pste6g02441 638 PANTHER LEUCINE RICH REPEAT KINASE 2 163 638 - -
Pste6g02441 638 FunFam Leucine-rich repeat receptor protein kinase MSP1 385 496 - -
Pste6g02441 638 Gene3D Ribonuclease Inhibitor 252 349 IPR032675 -
Pste6g02441 638 Pfam Protein kinase domain 424 620 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pste6g02441 638 Pfam Leucine rich repeat 143 202 IPR001611 GO:0005515
Pste6g02441 638 SUPERFAMILY Protein kinase-like (PK-like) 401 623 IPR011009 -
Pste6g02441 638 Gene3D Ribonuclease Inhibitor 28 184 IPR032675 -
Pste6g02441 638 Pfam Leucine Rich Repeat 215 237 IPR001611 GO:0005515
Pste6g02441 638 ProSiteProfiles Leucine-rich repeat profile. 215 236 IPR001611 GO:0005515
Pste6g02441 638 SMART LRR_typ_2 189 212 IPR003591 -
Pste6g02441 638 SMART LRR_typ_2 141 165 IPR003591 -
Pste6g02441 638 SMART LRR_typ_2 309 331 IPR003591 -
Pste6g02441 638 SMART LRR_typ_2 117 140 IPR003591 -
Pste6g02441 638 SMART LRR_typ_2 213 237 IPR003591 -
Pste6g02441 638 Gene3D Ribonuclease Inhibitor 187 251 IPR032675 -
Pste6g02441 638 ProSitePatterns Tyrosine protein kinases specific active-site signature. 542 554 IPR008266 GO:0004672|GO:0006468
Pste6g02441 638 Gene3D Transferase(Phosphotransferase) domain 1 497 638 - -
Pste6g02441 638 SUPERFAMILY L domain-like 52 334 - -
Pste6g02441 638 FunFam Nuclear pore complex protein NUP107 22 184 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste6g02441 Pste-Chr6 12007854 12009916 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste6g02441 92 588 Receptor kinase-like Gene Family AT4G08850 40.698 9.46e-107 344
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Pste6g02441 Pkinase 2.1e-45 CL0016