Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste6g02439 GTGCAGCAGACACACAGACAGAGAGCGCGTCGTTGTTCCAACGCAGTCACCATGGGGCGTATGCACAGTCGCGGTAAGGGTATCTCCAGTTCGGCTCTTCCCTATAAGAGAACCCCACCTAGCTGGTTGAAGATCTCTTCTCAGGATGTGGAGGAGAACATCTGCAAGTTTGCCAAGAAAGGTCTCACTCCATCCCAAATAGGTGTTATTCTTCGTGATTCTCATGGAATTGCTCAGGTGAGGAGTGTCACAGGAAGCAAGATTCTCCGCATATTGAAGGCTCATGGACTTGCTCCTGAAATTCCTGAAGATTTGTACCACCTGATCAAGAAGGCCGTCTCTATTAGGAAGCACTTGGAGAGGAACAGAAAGGACAAGGATTCTAAATTCAGGTTAATTTTGGTTGAGAGTAGGATTCACCGCCTTGCCCGTTACTATAAGAAGACAAAGAAGCTTCCACCTGTGTGGAAATAG 474 0.4747 VQQTHRQRARRCSNAVTMGRMHSRGKGISSSALPYKRTPPSWLKISSQDVEENICKFAKKGLTPSQIGVILRDSHGIAQVRSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWK 157
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste6g02439 157 ProSitePatterns Ribosomal protein S15 signature. 115 145 IPR000589 GO:0003735|GO:0005840|GO:0006412
Pste6g02439 157 FunFam 40S ribosomal protein S13 52 99 - -
Pste6g02439 157 FunFam 40S ribosomal protein S13 100 157 - -
Pste6g02439 157 CDD Ribosomal_S15p_S13e 87 157 IPR000589 GO:0003735|GO:0005840|GO:0006412
Pste6g02439 157 PANTHER RIBOSOMAL PROTEIN S15P/S13E 18 157 IPR023029 -
Pste6g02439 157 SMART Ribosomal_S13_N_2 18 77 IPR012606 GO:0003735|GO:0005840|GO:0006412
Pste6g02439 157 Pfam Ribosomal S13/S15 N-terminal domain 18 77 IPR012606 GO:0003735|GO:0005840|GO:0006412
Pste6g02439 157 Hamap 30S ribosomal protein S15 [rpsO]. 20 157 IPR023029 -
Pste6g02439 157 SUPERFAMILY S15/NS1 RNA-binding domain 83 156 IPR009068 -
Pste6g02439 157 Gene3D - 100 157 - -
Pste6g02439 157 Gene3D - 52 99 - -
Pste6g02439 157 SMART Ribosomal_S15_2 87 157 IPR000589 GO:0003735|GO:0005840|GO:0006412
Pste6g02439 157 Pfam Ribosomal protein S15 91 151 IPR000589 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste6g02439 Pste-Chr6 12000978 12002268 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste6g02439 18 157 Cytoplasmic Ribosomal Protein Gene Family AT4G00100 92.857 7.47e-95 269
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste6g02439 6 12000978 12002268 Pste6g02439 6 12000978 12002268 ECH