Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste6g02416 TTTTTGATTTTTGGTTTTGTGGGGTTTTTGGACATATGCACTTTTGGCCCTGGCCAACATGGGCCATGTTTGATTATGGAAGATTCTGATCAACCAACCAAATCTGCTGAAAACCAGCAAACTGAACAAGTGTGTAGTTTTTTCAGAAAACCAGTTAATAAAAAGAATATAAGGAAACGTACTATTGATAATGAAGATAACGAGGAGGAATCAAACAAAGAAACTTCTCTTCTGCATATTCAGAAGAAAACCTTAAAGCCTGACAATAAGTTGTACTTTACCTCTGGCTCATCAAAAAGCTCTGCATCTGCTGAACCAAATGAAGAACCAGGAAAACCAGTCTTTCAGTTTGAGTCTTCAAAAGAGATTCAAGTTCAACATGACAGCAAAGCAACAGCAACTCTAGAGACCGAGACTGAGTTTTCAAAAGATGCTCGTGCCATCCGTGAAAGAGCTCTTAAGCAGGCAGCGGAGAGTTTGAAAGGGAAAATCACAAGCTCTGATAATGAAAAATTATATAAGGGAATGAATAGTTACAAAGACTATAAAGCTGGCTTTCGTAGAGAGCAAACAATTGCTAGTGAAAAAGCTGGTGGGGCACATGGTCCTCTTCGGGCTTCAGCTCATATAAGAGTTTCAGCAAGGTTTGATTATCAGCCTGACATATGTAAGGATTATAAGGAAACTGGTTATTGTGGATATGGTGATGCATGTAAGTTTATGCATGATCGAGGGGATTACAAGTCTGGGTGGCAGTTGGAGAAGGAATGGGATGAAGCTGAGAAAGCAAGGAAGATGAGATTGGCTGCAGGAGAGGATGCAGAGGAGGAGGGTGCTAATTTGACTGACGAAGATGATGATGATTCATTACCATTTGCATGCTTCATTTGTAGAAACCCTTTTGTGGATCCTGTAGTTACCAAGTGCAAGCACTACTTCTGTGAGCATTGTGCATTGAAGCATCACGCAAAAAATAAGAAGTGTTTTGTCTGCAACCAGCCAACACATGGCATTTTCAATGTTGCTCAGGAGATACGCAAGAAGATGGCCGAGGATAAATAA 1062 0.404 FLIFGFVGFLDICTFGPGQHGPCLIMEDSDQPTKSAENQQTEQVCSFFRKPVNKKNIRKRTIDNEDNEEESNKETSLLHIQKKTLKPDNKLYFTSGSSKSSASAEPNEEPGKPVFQFESSKEIQVQHDSKATATLETETEFSKDARAIRERALKQAAESLKGKITSSDNEKLYKGMNSYKDYKAGFRREQTIASEKAGGAHGPLRASAHIRVSARFDYQPDICKDYKETGYCGYGDACKFMHDRGDYKSGWQLEKEWDEAEKARKMRLAAGEDAEEEGANLTDEDDDDSLPFACFICRNPFVDPVVTKCKHYFCEHCALKHHAKNKKCFVCNQPTHGIFNVAQEIRKKMAEDK 353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste6g02416 353 MobiDBLite consensus disorder prediction 89 105 - -
Pste6g02416 353 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 292 351 IPR013083 -
Pste6g02416 353 SMART c3hfinal6 217 244 IPR000571 GO:0046872
Pste6g02416 353 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 218 243 IPR000571 GO:0046872
Pste6g02416 353 SUPERFAMILY RING/U-box 293 336 - -
Pste6g02416 353 MobiDBLite consensus disorder prediction 58 77 - -
Pste6g02416 353 FunFam RING finger protein 113A 292 351 - -
Pste6g02416 353 SUPERFAMILY CCCH zinc finger 216 248 IPR036855 GO:0046872
Pste6g02416 353 PANTHER ZINC FINGER PROTEIN 183 26 353 IPR039971 -
Pste6g02416 353 Pfam Zinc finger, C3HC4 type (RING finger) 293 336 - -
Pste6g02416 353 ProSiteProfiles Zinc finger RING-type profile. 294 332 IPR001841 -
Pste6g02416 353 MobiDBLite consensus disorder prediction 89 113 - -
Pste6g02416 353 ProSitePatterns Zinc finger RING-type signature. 309 318 IPR017907 -
Pste6g02416 353 CDD RING-HC_RNF113A_B 287 340 - -
Pste6g02416 353 ProSiteProfiles Zinc finger C3H1-type profile. 217 245 IPR000571 GO:0046872
Pste6g02416 353 Gene3D - 215 249 - -
Pste6g02416 353 SMART ring_2 294 331 IPR001841 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste6g02416 32 353 C2H2 Transcription Factor Family AT1G01350 68.012 9.64e-163 457
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Pste6g02416 zf-C3HC4_3 1.3e-08 CL0229