Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste6g02398 AGAATTTTTATACATCTCTGCCTTGATTTTGACCAAATTGCAGGTTTAATACCAGTAGAACTGGGAAATTTAACTCACTTGATTGAATTATCTCTCTCTAGAAATTCACTAACAGGTTCAACCCCTCCTACCCTGGGTCAATTGAAAAGTTTAACACATCTCTTGCTTGATTCTAACGATATTCAAGGTAAGCTCAAGCCTAAAAAGCTTTTTAAAACCCCTCGCCAATTCACTTCATTGCATTATGGATCCCTTCTAAATTTGGAGAATCTAATACATCTCTTGCTTGATTTTGACCAAATTGCAGGTCCAATACCAGTACAACTACAAAATTTAACTCAATTGACTGAATTATTTCTCTCTAGTAATTCACTAACAGGTTTAATCCCTCCTACTCTGGGTCAATTGAAGAATTTAATAAATCTCAATCTTGATTCTAACAAAATTACGGGTGCCATACCAATAGAATTAGAAAATTTGACATCTGTAACATACTTAGATCTATCAAATAACTCCCTTTCTAGTTCGATACCATTAGAGATTGCAACACCATCCAACCTCATCCTCGTAGACCTTTCCTTAAACAACCTTACAGGTAAACTACCAAAGGAACTTGCTAACATACCAGACCTAAACCTTTCATACAATTTTTTTTACTTCTCACGAGACCTTGACTCGAACTCCAAGTTGCCAAATTATTGTCATTTTGATAAAGATTCATTAATTGGTTACCACACGCTAAACTTTGCATCATGTCATTTTGTCTACCACACTAATCCTCAAACTAAAAATGTTAAGTTTACTGTGTTAATTGCTCTTCCCTTCACTTGCTTCATTCTTTTGGTGATACTTTCAACAATATTATACTTCAAAAGATGTATGTTTAAAGCCAAATTTGAAGCAAAATCAATAAAAAAAGGAGATTTGTTTAGCATATGGAACTATGATGGTAAAATTTCATTTGAAGACATCATTAACGCAACCGAGGACTTTCACCTCAAGTATTGTATTGGGACTGGTGCATATGGCAGTGTCTGTAGAGCCCAATTGCCAAGTGGTAAAATTGTTGCATTGAAAAAACTTCATCAATTAGAATCTCACAATCCATTGTTTAACAAAAGTTTCCACCATGAAGTCAAAATGTTAACGGAAATTCGTCATAGAAACATAGTAAAGCTTCATGGCTTTTGTCTCCACAACCGGTGTATGTTTCTTATCTATCAATACATGGAAAGAGGAAGCTTATTTTATACCTTGAATAATAATGTCGAAGCTGAGGAGTTGAATTGGAGTAAGAGGGTGAATATCATAACGGAATGGCACATGCTCTATCCTACATGCATCATGATTGTACCCCACCAATTATACATCGAGATGGAACAAGCCGTTGTCTCAGACTTTGGCACAGCTAGATTCATTTATCTTGATTCTTCTAATCAAACCTTGGTAGCTTGCACATATGGACATATCGCCCCAGAGTTTGCCTATCCAATGAATATCACAGAAAAATGTGATGTTTACAGTTTCGGAGTGCTAATCTCATCTTTATCAAACTCAAATACTCAAAACATGTTGTTAAAAGACCTTTTAGATGATCGTCTTACTCTTCCTAACTTTGGAAACGACACT 1629 0.3524 RIFIHLCLDFDQIAGLIPVELGNLTHLIELSLSRNSLTGSTPPTLGQLKSLTHLLLDSNDIQGKLKPKKLFKTPRQFTSLHYGSLLNLENLIHLLLDFDQIAGPIPVQLQNLTQLTELFLSSNSLTGLIPPTLGQLKNLINLNLDSNKITGAIPIELENLTSVTYLDLSNNSLSSSIPLEIATPSNLILVDLSLNNLTGKLPKELANIPDLNLSYNFFYFSRDLDSNSKLPNYCHFDKDSLIGYHTLNFASCHFVYHTNPQTKNVKFTVLIALPFTCFILLVILSTILYFKRCMFKAKFEAKSIKKGDLFSIWNYDGKISFEDIINATEDFHLKYCIGTGAYGSVCRAQLPSGKIVALKKLHQLESHNPLFNKSFHHEVKMLTEIRHRNIVKLHGFCLHNRCMFLIYQYMERGSLFYTLNNNVEAEELNWSKRVNIITEWHMLYPTCIMIVPHQLYIEMEQAVVSDFGTARFIYLDSSNQTLVACTYGHIAPEFAYPMNITEKCDVYSFGVLISSLSNSNTQNMLLKDLLDDRLTLPNFGNDT 543
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste6g02398 543 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 82 177 - -
Pste6g02398 543 SMART LRR_typ_2 160 184 IPR003591 -
Pste6g02398 543 SMART LRR_typ_2 112 136 IPR003591 -
Pste6g02398 543 SMART LRR_typ_2 24 48 IPR003591 -
Pste6g02398 543 Gene3D Ribonuclease Inhibitor 3 77 IPR032675 -
Pste6g02398 543 Pfam Leucine rich repeat 8 61 IPR001611 GO:0005515
Pste6g02398 543 Pfam Leucine rich repeat 114 173 IPR001611 GO:0005515
Pste6g02398 543 FunFam Leucine-rich repeat receptor protein kinase MSP1 295 409 - -
Pste6g02398 543 Gene3D Transferase(Phosphotransferase) domain 1 409 538 - -
Pste6g02398 543 PANTHER LEUCINE RICH REPEAT KINASE 2 10 538 - -
Pste6g02398 543 Gene3D Phosphorylase Kinase; domain 1 293 408 - -
Pste6g02398 543 ProSiteProfiles Protein kinase domain profile. 331 543 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pste6g02398 543 SUPERFAMILY L domain-like 5 237 - -
Pste6g02398 543 ProSitePatterns Protein kinases ATP-binding region signature. 337 359 IPR017441 GO:0005524
Pste6g02398 543 Pfam Protein kinase domain 332 519 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pste6g02398 543 SUPERFAMILY Protein kinase-like (PK-like) 312 514 IPR011009 -
Pste6g02398 543 Gene3D Ribonuclease Inhibitor 78 269 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste6g02398 Pste-Chr6 11753343 11755190 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste6g02398 27 492 Receptor kinase-like Gene Family AT4G08850 34.694 7.73e-73 248
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Pste6g02398 Pkinase 1.6e-22 CL0016