Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste6g02396 TTTCAATTCAAGCAGCTTTGGAAAAACCAACCAGCCAAACGGGTTTTTTTCACCTATTTGTAAGTTTCCTTGAATTTTCCAGAACAAACAGTTTTTTTTCTTCTTTTTTTTGTGTTTTTTTCCTTTGTGTTCTTGTGTTTTGGCTTTCTGGGGTGAGTCTGAGTTCAGTTGAGTTAATGAGTTTCTGGTTGAGCTGAAAAAGAAATCTTAATACAAGTTTTCAGCTTGAGAAGAAGCTAGCTCAAGTGTGGAATCACAGTGACAGGTGTTGGTTTGTTAATATAGGCTTGGAAGTGCAAATTCAATATTTGCATGGAAGCCAGAGAAGGTATTAGTTCTGGGGTTACAGTGATAGGGGCAGAAGCTCCATCAGCTTACCACGTGGCACCGAGGAGTGAAGCTCCAAACCAGGTTCATTTCCCCGATGGTAGTGGCGGCGGAGGCGGCGGCGGTGCTGCTGCTGCAGCTATTGTTGTCTCACCTGTGAGTGTGGGGTTGGATGGAACAGCAGTTAAGAAGAAACGGGGAAGACCCAGGAAATATGGTCCTGATGGGTCTGTCACTATGGCATTGTCACCAATGCCAATATCATCTTCTGCACCAACTTCTAATGACTTTTCATCTGGGAAGCGGGGGAAAATGCGGGGAATGGAATACAAAAAGTCAAAAAAAGTTGGTTTGGATTATTTAGGTGACTTGAATGCATGCTCAGATGGGACAAATTTTATGCCACATATCATCACTGTCAATGCTGGCGAGGACATTACGATGAAGGTGATATCCTTTTCTCAACAAGGGCCACGAGCTATATGTATCTTATCTGCGAATGGTGTAATTTCAAATGTTACACTTCGTCAGCCTGATTCTTCTGGGGGTACTCTAACTTATGAGGGCCGTTTTGAGATACTTTCCTTGTCTGGATCATTCATGCCTACCGACAACCAAGGAACAAGAAGCAGGTCTGGTGGAATGTCTGTCTCGTTGGCTAGCCCTGACGGCCGTGTTGTTGGTGGCGGAGTTGCCGGTCTTCTTGTAGCTGCCAGCCCTGTGCAGGTGGTGGTGGGAAGCTTTTTACCAAGCAGCCAGCAAGAACAGAAACTAAAGAAGCCCAAGTCTACTGATTATGCACAAGCAACTGTTACTCCAGCCATTGCAGTATCTTCTGCACCACCACCACCTCCAACCAATGCTGACAAAGAGGATGTGAATGTTATGGGTGGAGTACATGTACTGCAAAATTCTGGAACCCTTAACTCTAACCTCACTCCTCCCAATGCCTTTAGAAGAGATAACTGGGTCAACATGCACTCCATGCCAGACTCAAGAAAGTCAGCTACTGATATTAACATATCTCTGCCTGATAGTTAAGTTGATGGTCAACCTGCACTCTCTTTCCTCAACTACTCTTGCTGACAACATTCATGACTCAGCTGCTTTGTTTTTATGTTTACAGTGTTTTCTCTCTTATCTAAAGATTGTTTCAAACATGTCTGATGTCTATTACCATAGGATGTAGTTTCAGTGTTGTAAGTTGCAGCTAGGTAGAGTATCTGATATATTTATCGGCTGATTAGGTAGATGCTGCACTCTGCAGTATTATGAGTAGACTAATTCGGATGTAATGAAAACCTGTTTGCCTATTTATTTATGACTGAATTTCTTGGAGCTTTTGCTGT 1676 0.4326 MEAREGISSGVTVIGAEAPSAYHVAPRSEAPNQVHFPDGSGGGGGGGAAAAAIVVSPVSVGLDGTAVKKKRGRPRKYGPDGSVTMALSPMPISSSAPTSNDFSSGKRGKMRGMEYKKSKKVGLDYLGDLNACSDGTNFMPHIITVNAGEDITMKVISFSQQGPRAICILSANGVISNVTLRQPDSSGGTLTYEGRFEILSLSGSFMPTDNQGTRSRSGGMSVSLASPDGRVVGGGVAGLLVAASPVQVVVGSFLPSSQQEQKLKKPKSTDYAQATVTPAIAVSSAPPPPPTNADKEDVNVMGGVHVLQNSGTLNSNLTPPNAFRRDNWVNMHSMPDSRKSATDINISLPDS 351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste6g02396 351 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 33 325 IPR039605 GO:0003680
Pste6g02396 351 FunFam AT-hook motif nuclear-localized protein 1-like 140 271 - -
Pste6g02396 351 SUPERFAMILY AF0104/ALDC/Ptd012-like 138 258 - -
Pste6g02396 351 CDD DUF296 140 230 IPR005175 -
Pste6g02396 351 Gene3D - 140 276 - -
Pste6g02396 351 ProSiteProfiles PPC domain profile profile. 135 277 IPR005175 -
Pste6g02396 351 MobiDBLite consensus disorder prediction 69 109 - -
Pste6g02396 351 Pfam Plants and Prokaryotes Conserved (PCC) domain 140 253 IPR005175 -
Pste6g02396 351 MobiDBLite consensus disorder prediction 87 105 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste6g02396 Pste-Chr6 11742033 11750589 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste6g02396 10 348 AT-hook Motif Nuclear Localized (AHL) Family AT4G12080 51.233 1.69e-98 294
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste6g02396 6 11742033 11750589 Pste6g02396 6 11742033 11750589 ECH
Pste5g01696 5 10748434 10753009 Pste6g02396 6 11742033 11750589 PCT