Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste6g02384 ATGTTGCAACCTTTCACTTCTTGTTTCACCTTTCTTCATAGGAAGACCAAATTCTTCCTCCACCAACCAAGAATCAAGGGCATGATGAGTGCATGCTGTAGAAGAAAACAAACTAACAGAAAATTCTCTTCAAATTCTGACTTGTCAGCCTCTTCTTTCCTTCACATGGAGCTTTCCACTCAGTTTTATCAAGTTTTCAAGCTTATTGACACTAATGGTGATGGGAAGATCTCAACCACTGAGCTAAGTGAAGTGCTTGCATGCCTTGGATACAACAAGTGCACAGCTGCTAAGGAAGCTGAAGGCATGGTGAGAGTGTTGGACTTCAATGGGGATGGGTTTGTGGACTTTGATGAGTTCATGGTTGTCATGAATGGCACGGAAGAAGAAGAGGAAGACAAGATTGGAAGTGGCATGAAGCATGATGATGGTTACCTCATGGATGCTTTTCTTGTCTTTGACACTGACAAGAATGGACTGATTTCAGCCAAGGAACTGCAGAGAGTTCTGATCAATCTAGGGTCCGATAATTGTAGCCTCAAAGAGTGCAAGCGTATGATCAAAGGTGTTGATAAAAATGGAGATGGCTTTGTGGATTTTGAAGAATTTCGATTCATGATGCAAAGTGGAGTTGCTAATTAG 642 0.4174 MLQPFTSCFTFLHRKTKFFLHQPRIKGMMSACCRRKQTNRKFSSNSDLSASSFLHMELSTQFYQVFKLIDTNGDGKISTTELSEVLACLGYNKCTAAKEAEGMVRVLDFNGDGFVDFDEFMVVMNGTEEEEEDKIGSGMKHDDGYLMDAFLVFDTDKNGLISAKELQRVLINLGSDNCSLKECKRMIKGVDKNGDGFVDFEEFRFMMQSGVAN 213
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste6g02384 213 ProSitePatterns EF-hand calcium-binding domain. 154 166 IPR018247 -
Pste6g02384 213 PANTHER EF-HAND CALCIUM-BINDING DOMAIN CONTAINING PROTEIN 146 208 - -
Pste6g02384 213 ProSitePatterns EF-hand calcium-binding domain. 108 120 IPR018247 -
Pste6g02384 213 Gene3D - 9 141 - -
Pste6g02384 213 ProSiteProfiles EF-hand calcium-binding domain profile. 141 176 IPR002048 GO:0005509
Pste6g02384 213 FunFam Calmodulin 1 51 210 - -
Pste6g02384 213 ProSitePatterns EF-hand calcium-binding domain. 191 203 IPR018247 -
Pste6g02384 213 Gene3D - 142 212 - -
Pste6g02384 213 Pfam EF-hand domain pair 146 208 IPR002048 GO:0005509
Pste6g02384 213 Pfam EF-hand domain pair 61 124 IPR002048 GO:0005509
Pste6g02384 213 ProSiteProfiles EF-hand calcium-binding domain profile. 57 92 IPR002048 GO:0005509
Pste6g02384 213 ProSitePatterns EF-hand calcium-binding domain. 70 82 IPR018247 -
Pste6g02384 213 SMART efh_1 145 173 IPR002048 GO:0005509
Pste6g02384 213 SMART efh_1 182 210 IPR002048 GO:0005509
Pste6g02384 213 SMART efh_1 99 127 IPR002048 GO:0005509
Pste6g02384 213 SMART efh_1 61 89 IPR002048 GO:0005509
Pste6g02384 213 ProSiteProfiles EF-hand calcium-binding domain profile. 95 130 IPR002048 GO:0005509
Pste6g02384 213 CDD EFh 65 124 IPR002048 GO:0005509
Pste6g02384 213 CDD EFh 145 208 IPR002048 GO:0005509
Pste6g02384 213 SUPERFAMILY EF-hand 59 207 IPR011992 -
Pste6g02384 213 ProSiteProfiles EF-hand calcium-binding domain profile. 178 213 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste6g02384 Pste-Chr6 11645609 11646250 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste6g02384 34 210 EF-hand Containing Proteins AT1G24620 40.541 6.73e-34 118