Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste6g02380 ATGGATCCTGTAGCAGCACAAGGACGTCCTCTCCCTCCACCTTTTCTCACTAGAGATCTTGTCTTACACCCTCACCACCAATTCCAGCCCCATCACAACCACCAAAACACCGAGGAAGAAGCCGGCAATGGCCGCGGCCAGAAGCGTGACCGCGACGATAACGCCGGCGGAGGAGGGGCCACCACACCCCCTCACAACGGCGGAGAAGGCAAGGAGCCCGGGTCAGGTGATGGAGGAGGGAGTGAAATGTCGAGAAGACCAAGAGGAAGACCCGCAGGCTCCAAAAACAAGCCCAAACCACCCATTATCATCACAAGGGACAGTGCCAACGCCCTCCGATCCCATGTCATGGAAATCGCCAACGGCTGCGACATCATGGAGAGTGTCACCGCCTTCGCAAGGCGGCGACAGCGCGGCATCTGCGTCCTCAGCGGCAGCGGCACCGTCACCAACGTCATCCTCCGGCAGCCGGCCTCACCCGGTGCCATCGTGACCCTTCATGGAAGGTTTGAGATTCTGTCCCTGTCCGGATCATTCCTGCCACCGCCGGCTCCACCGGCGGCATCAGGACTAGCCATTTATCTGGCTGGCGGACAGGGACAGGTAGTAGGTGGAAGTGTGGTGGGACCCCTTGTAGCTTCGGGCCCTGTTGTTATCATGGCTGCTTCATTTGGTAATGCTGCTTATGAGAGACTACCCTTAGAGGAAGAGGAAACTCCGGTGCCAGCTGCCACCGGAGGATTAGGATCACCGGGAATTCCGGGGACACAACAACAACCGCAATCGCAGCCACAACAACAACAGCTTGTGGGAGATCCTAATAGTTCTTCTCTTTTCCATGGAGTGCCTCAGAATCTTCTCAATTCGGTTCAATTGCCGGCTGAGGGTTATTGGGGTGGCAGTGCTCGCCCTCCTTTTTAA 921 0.5733 MDPVAAQGRPLPPPFLTRDLVLHPHHQFQPHHNHQNTEEEAGNGRGQKRDRDDNAGGGGATTPPHNGGEGKEPGSGDGGGSEMSRRPRGRPAGSKNKPKPPIIITRDSANALRSHVMEIANGCDIMESVTAFARRRQRGICVLSGSGTVTNVILRQPASPGAIVTLHGRFEILSLSGSFLPPPAPPAASGLAIYLAGGQGQVVGGSVVGPLVASGPVVIMAASFGNAAYERLPLEEEETPVPAATGGLGSPGIPGTQQQPQSQPQQQQLVGDPNSSSLFHGVPQNLLNSVQLPAEGYWGGSARPPF 306
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste6g02380 306 ProSiteProfiles PPC domain profile profile. 109 247 IPR005175 -
Pste6g02380 306 Pfam Plants and Prokaryotes Conserved (PCC) domain 113 225 IPR005175 -
Pste6g02380 306 MobiDBLite consensus disorder prediction 237 282 - -
Pste6g02380 306 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 35 286 IPR014476 GO:0003680
Pste6g02380 306 SUPERFAMILY AF0104/ALDC/Ptd012-like 109 241 - -
Pste6g02380 306 PIRSF ESCAROLA 16 306 IPR014476 GO:0003680
Pste6g02380 306 MobiDBLite consensus disorder prediction 251 282 - -
Pste6g02380 306 MobiDBLite consensus disorder prediction 1 103 - -
Pste6g02380 306 FunFam AT-hook motif nuclear-localized protein 112 239 - -
Pste6g02380 306 MobiDBLite consensus disorder prediction 31 55 - -
Pste6g02380 306 CDD DUF296 113 224 IPR005175 -
Pste6g02380 306 Gene3D - 112 241 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste6g02380 Pste-Chr6 11609286 11610206 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste6g02380 1 306 AT-hook Motif Nuclear Localized (AHL) Family AT2G45430 62.805 5.97e-89 266
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste6g02380 6 11609286 11610206 Pste6g02380 6 11609286 11610206 ECH