Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste6g02379 atggaacctctcttcatcaacgactccacattctcttctgctaacccttccttgtccgagatttggcccactccttggagtgactgtggcagcaataagcatataagattatcaggagcagcatcccatgatgaaaacgttaatgttgctgaagcagacgccacttcggtagccggtaacaacttacagttaccccaacaacccacttcttccgaccacccacctaagcaagactacatacacgtgcgagctagaaggggtcaagccaccgatagccacagtctcgctgagagagctagaagggaaaagatcagtgagaggatgaaaattcttcaagatttagtccccgggtgcaataaggtaattggtaaagcacttgtgctcgatgagataattaactatatccagtcactgcagcgtcaggtcgagttcctttcaatgaaacttgaggcagttaattcgagattgagcatgagcccttctattcaatgtttcccttcaaaagaagttggcactcagccatttgaccttgccggaataatatttggatcacaagcgggcaggggatatgctcaaggatcacaacctggatggctgcatatgcagatagctggtggttttgggaaagcaacataa 636 0.0 MEPLFINDSTFSSANPSLSEIWPTPWSDCGSNKHIRLSGAASHDENVNVAEADATSVAGNNLQLPQQPTSSDHPPKQDYIHVRARRGQATDSHSLAERARREKISERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQRQVEFLSMKLEAVNSRLSMSPSIQCFPSKEVGTQPFDLAGIIFGSQAGRGYAQGSQPGWLHMQIAGGFGKAT 211
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste6g02379 211 Coils Coil 135 155 - -
Pste6g02379 211 Gene3D - 85 162 IPR036638 GO:0046983
Pste6g02379 211 Pfam Helix-loop-helix DNA-binding domain 92 139 IPR011598 GO:0046983
Pste6g02379 211 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 86 157 IPR036638 GO:0046983
Pste6g02379 211 FunFam Basic helix-loop-helix transcription factor 85 157 - -
Pste6g02379 211 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 50 181 IPR024097 GO:0006355
Pste6g02379 211 CDD bHLH_AtBPE_like 78 157 - -
Pste6g02379 211 SMART finulus 94 144 IPR011598 GO:0046983
Pste6g02379 211 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 88 138 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste6g02379 Pste-Chr6 11603457 11606349 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste6g02379 73 211 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G62610 68.345 1.68e-62 194
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pste6g02379 HLH 1.4e-08 No_clan