Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste6g02338 atggcttctgatcccatgcctatcagacactacacttacaacaggaaacagaagtccctcggtcttttatgcaccaattttttgagcttgtacaaccgagaaactgtccacttgattggcctagatgatgccgccacccgattaggtgttgagagaagacggatctatgacattgttaacgttctcgagagtattggggtgctctccaggaaggcaaaaaatcaatacacgtggaaaggatttgctgcaattccgctaacacttcaggagctcaaggaagatggtttgaaggataattcaaattccttgcgcggatctggacatgataatgacaaagtgtctgatgaagaagatgacgaggatacgcagtctaatacagctactggaagccaaaatgataagttgaaccctaattctgcacttgaggaaatacagtccaatcccgctgctggaagtcaaaatgacaagttggaccctaattctacaattcctaaacctctgagaaatgaaaatcgaagggagaaatctctggctctgcttactcagaattttgtcaaactctttgtctgctctaatgtggaattgatctcccttgacgaggctgcaaaattgttgcttggtgatgcccatcatacatcaataatgagaacaaaagttagacgcctatatgacatcgcaaatgtgctatcctccatgaaccttatagagaagacccatacgagagatacaagaaaaccagcattcaggtggctgggtcctgaagggaagacatggaaggagtcatttcacaaatcaaatttcaacgactctaggaaaagggcgtttggaagtgatatcacaaacatcagttttgagaggaagaaagtggaattgttggcgaatggggacttgaatccgaatcctaagaagcctagaatggaaaatgagaatgggccgagtcaggaagatgaaaaccatttaaaacaaggcaaaaaacaagcttcaaagagctatcggtttggtccctttgctccagcttgcgtgccaaaagttgtagcctctgagaataataacgcgaagcaggtgcatgactgggatagtctcgcaactgcacatggccctcagtaccaaaacgaagaatacagttaa 1128 0.0 MASDPMPIRHYTYNRKQKSLGLLCTNFLSLYNRETVHLIGLDDAATRLGVERRRIYDIVNVLESIGVLSRKAKNQYTWKGFAAIPLTLQELKEDGLKDNSNSLRGSGHDNDKVSDEEDDEDTQSNTATGSQNDKLNPNSALEEIQSNPAAGSQNDKLDPNSTIPKPLRNENRREKSLALLTQNFVKLFVCSNVELISLDEAAKLLLGDAHHTSIMRTKVRRLYDIANVLSSMNLIEKTHTRDTRKPAFRWLGPEGKTWKESFHKSNFNDSRKRAFGSDITNISFERKKVELLANGDLNPNPKKPRMENENGPSQEDENHLKQGKKQASKSYRFGPFAPACVPKVVASENNNAKQVHDWDSLATAHGPQYQNEEYS 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste6g02338 375 Gene3D - 167 253 IPR036388 -
Pste6g02338 375 Gene3D - 10 82 IPR036388 -
Pste6g02338 375 Pfam E2F/DP family winged-helix DNA-binding domain 16 80 IPR003316 GO:0005667|GO:0006355
Pste6g02338 375 Pfam E2F/DP family winged-helix DNA-binding domain 174 252 IPR003316 GO:0005667|GO:0006355
Pste6g02338 375 MobiDBLite consensus disorder prediction 124 166 - -
Pste6g02338 375 MobiDBLite consensus disorder prediction 97 170 - -
Pste6g02338 375 FunFam E2F transcription factor 8 10 82 - -
Pste6g02338 375 MobiDBLite consensus disorder prediction 293 331 - -
Pste6g02338 375 SUPERFAMILY "Winged helix" DNA-binding domain 174 253 IPR036390 -
Pste6g02338 375 FunFam E2F transcription factor-like E2FE 167 254 - -
Pste6g02338 375 SUPERFAMILY "Winged helix" DNA-binding domain 14 78 IPR036390 -
Pste6g02338 375 MobiDBLite consensus disorder prediction 308 324 - -
Pste6g02338 375 MobiDBLite consensus disorder prediction 97 112 - -
Pste6g02338 375 PANTHER TRANSCRIPTION FACTOR E2F 10 369 IPR015633 GO:0000978|GO:0006357
Pste6g02338 375 SMART E2F_TDP_2 15 80 IPR003316 GO:0005667|GO:0006355
Pste6g02338 375 SMART E2F_TDP_2 172 252 IPR003316 GO:0005667|GO:0006355
Pste6g02338 375 MobiDBLite consensus disorder prediction 354 375 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste6g02338 Pste-Chr6 11364835 11370496 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste6g02338 10 372 E2F-DP Transcription Factor Family AT3G48160 51.771 2.06e-111 329
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF E2F-DP Pste6g02338 E2F_TDP 1.2e-20 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste6g02338 6 11364835 11370496 Pste6g02338 6 11364835 11370496 ECH