Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste6g02309 atggcatcattcggaggcactacccagaagtgcacagtatgtgacaagaaagtgtactgggtggaacagctaactgctgacaacaaggtgtaccacaaatcttgcttcagatgtcaccactgcaagggtaccctcaaggttagaccgttgagtttctttgctttgatcaatgcttcatttcagctgagtaattattgttcctttgagggtgtcctatactgtaagcctcattttgatcaactgtttaagatgactggcagcttggacaaaagttttgaaggtattccaagaagtgctagagttgaaagatcttcagatcagatacaaaccaacaaagtttcaagattgttttctggaacacaggaaaagtgtgttggttgcaaaaaaacagtgtacccgattgaaaaggtgggagttgatgggaaatcataccacaagtcctgtttcaagtgcagccatggaggttgtgtaataagcccatcaaattatattgcccatgaacatcgtctttattgtagacatcaccacactcagctcttcaagcagaagggcaacttcagtcaattggacaaccatgaaaatgtccaagtcgtcactgatgagaacacaacacaacatccggatcccagtaatagtgccaatacaactccacctcatgactctacttcgtag 672 0.0 MASFGGTTQKCTVCDKKVYWVEQLTADNKVYHKSCFRCHHCKGTLKVRPLSFFALINASFQLSNYCSFEGVLYCKPHFDQLFKMTGSLDKSFEGIPRSARVERSSDQIQTNKVSRLFSGTQEKCVGCKKTVYPIEKVGVDGKSYHKSCFKCSHGGCVISPSNYIAHEHRLYCRHHHTQLFKQKGNFSQLDNHENVQVVTDENTTQHPDPSNSANTTPPHDSTS 223
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste6g02309 223 ProSitePatterns LIM zinc-binding domain signature. 11 45 IPR001781 -
Pste6g02309 223 CDD LIM2_SF3 124 184 - -
Pste6g02309 223 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 58 92 - -
Pste6g02309 223 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 150 188 - -
Pste6g02309 223 PANTHER OS06G0237300 PROTEIN 2 108 - -
Pste6g02309 223 FunFam LIM domain and actin-binding 1 118 188 - -
Pste6g02309 223 Pfam LIM domain 11 79 IPR001781 -
Pste6g02309 223 Pfam LIM domain 124 179 IPR001781 -
Pste6g02309 223 ProSiteProfiles LIM domain profile. 122 182 IPR001781 -
Pste6g02309 223 Gene3D Cysteine Rich Protein 118 188 - -
Pste6g02309 223 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 4 36 - -
Pste6g02309 223 MobiDBLite consensus disorder prediction 201 223 - -
Pste6g02309 223 ProSiteProfiles LIM domain profile. 9 84 IPR001781 -
Pste6g02309 223 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 116 149 - -
Pste6g02309 223 Gene3D Cysteine Rich Protein 6 116 - -
Pste6g02309 223 SMART lim_4 10 77 IPR001781 -
Pste6g02309 223 SMART lim_4 123 175 IPR001781 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste6g02309 Pste-Chr6 11139197 11142634 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LIM Pste6g02309 LIM 2.5e-07 CL0167
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste6g02309 6 11139197 11142634 Pste6g02309 6 11139197 11142634 ECH
Pste6g02309 6 11139197 11142634 Pste2g00147 2 648781 652456 PCT