Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste6g02301 CTAACTTCCACTTCTCTGAAACACACACACCATTATCTCATCACAACTACTACTACTTACTACTATGCCTTCTCTCTCTCCCCTTTTGCACTAAACCCCACTTTCTCTTCTATATCAAGGGTTGATCACAGAACCTCAATATATTTCTAATTATAATTGATAAAGTTTGAGTTATTGTTTCGAGACACACAGAAAAAGAGAGAGAGAGAATGGGTAGAGGGAGGGTTGAGCTGAAGAGGATAGAGAACAAAATCAACCGCCAAGTTACTTTCTCAAAAAGAAGGAACGGTTTGCTCAAGAAAGCCTATGAGCTCTCAGTTCTCTGTGATGCTGAGGTTGCCCTCATCATTTTCTCAAGCCGTGGCAAGCTCTATGAATTTGGAAATGTTGGCATTACCAAAACTATTGAACGATACCAACGTTGCTCTTTTACTCCTCAAGATGAGCATGTTGAATGTGAAACTCAGAGCTGGTACCAAGAGGTGTCAAAGCTAAAGGCAAAGTATGAGTCTCTTCAAAGGACACAGAGGCATTTGCTTGGGGAAGATCTTGGACCATTGAACATAAAGGAGCTGCAGAATCTTGAGAAACAGCTTGAAGGGGCTTTAGCACAAGCTAGGCAAAGGAAGACACAAATTATGATTGAACAAATGGAAGAGCTTCGCAGAAGGGAGCGCCATCTTGGAGACATGAATAAGCAACTTAGACTCAAGCTTGAAGCAGAGGGATTTAATCTTAAAGCTATGGAAAGCTTGTGGAGCTCTACTTCAGCTGCTGGAAATAGTGGCTTTCCCTTTCAGCCTGCTCAAAACAACCCTATGGATTACCAGGCAGAACCCTTTTTGCAAATAGGGTACCATCAATTTGTTCAAGCTGAGGCATCAAATGTGCCAAAGAGCATGGCTTGTGAGACTAACTTCATGCAGGGGTGGATCCTTTGATCAATCTTATTTAATCATGTGATTTACCTTATTGCCTATATGCTTTTTAGATTTGTGTTTTGGTTGTTGCTAAATGTACCTTTGAGACAAGCAAAGTTCCAGACTTCTTTAGTGCTTTCTTGTAATTGGATATAAGTACAGACAATGGTTTTACTATATGTCAAAGCA 1109 0.4058 MGRGRVELKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFGNVGITKTIERYQRCSFTPQDEHVECETQSWYQEVSKLKAKYESLQRTQRHLLGEDLGPLNIKELQNLEKQLEGALAQARQRKTQIMIEQMEELRRRERHLGDMNKQLRLKLEAEGFNLKAMESLWSSTSAAGNSGFPFQPAQNNPMDYQAEPFLQIGYHQFVQAEASNVPKSMACETNFMQGWIL 243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste6g02301 243 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Pste6g02301 243 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Pste6g02301 243 Gene3D - 13 82 IPR036879 GO:0003677|GO:0046983
Pste6g02301 243 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Pste6g02301 243 Pfam K-box region 84 169 IPR002487 GO:0003700|GO:0005634|GO:0006355
Pste6g02301 243 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 184 - -
Pste6g02301 243 CDD MADS_MEF2_like 2 73 IPR033896 GO:0000977|GO:0045944
Pste6g02301 243 Coils Coil 148 168 - -
Pste6g02301 243 ProSiteProfiles K-box domain profile. 85 175 IPR002487 GO:0003700|GO:0005634|GO:0006355
Pste6g02301 243 SUPERFAMILY SRF-like 2 80 IPR036879 GO:0003677|GO:0046983
Pste6g02301 243 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Pste6g02301 243 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Pste6g02301 243 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Pste6g02301 243 Coils Coil 119 142 - -
Pste6g02301 243 FunFam MADS-box transcription factor 1 13 87 - -
Pste6g02301 243 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste6g02301 Pste-Chr6 11079862 11086183 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste6g02301 1 243 MADS-box Gene Family AT2G45650 65.079 3.97e-114 325
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Pste6g02301 K-box 2.2e-30 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste6g02301 6 11079862 11086183 Pste6g02301 6 11079862 11086183 ECH
Pste6g02296 6 11034964 11037078 Pste6g02301 6 11079862 11086183 ECH