Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste6g02296 ATGCGTGGATGTTTATTATCAACACATGCACAAGCCTTTATTATTCCTAGCTCCCTTCCTTGGTTGGAAAGATTTTCTCCAGATTTTGCCAAGTCTGTGCGTATCTGCTTCGTTTTGCTTTCGGTGTCTTCAAGTCGTGCTTGCAAGGCTCAGATTTGCTGCAAATCTCTCCATTTCCTGTTCATCAGAAAGCTTAATTTCTTGGTTTTCTCTATAGCTACCTGTCTGCAGAAAGAAGAAGAAATGGTGAGAGGAAAAACTCAGATGAAGCGTATAGAGAACGCCACAAGCAGGCAAGTAACTTTCTCAAAGAGAAGAAACGGATTGCTGAAGAAGGCCTTTGAGCTATCAGTTCTGTGCGATGCTGAGGTTGCTCTTATCATCTTCTCTCCAAGAGGGAAGCTCTATGAATTTGCTAGCTCCAGTAAATTTGGCATCCCCTCTTAA 447 0.4251 MRGCLLSTHAQAFIIPSSLPWLERFSPDFAKSVRICFVLLSVSSSRACKAQICCKSLHFLFIRKLNFLVFSIATCLQKEEEMVRGKTQMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFASSSKFGIPS 148
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste6g02296 148 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 91 138 IPR002100 GO:0003677|GO:0046983
Pste6g02296 148 PRINTS MADS domain signature 119 140 IPR002100 GO:0003677|GO:0046983
Pste6g02296 148 PRINTS MADS domain signature 84 104 IPR002100 GO:0003677|GO:0046983
Pste6g02296 148 PRINTS MADS domain signature 104 119 IPR002100 GO:0003677|GO:0046983
Pste6g02296 148 ProSitePatterns MADS-box domain signature. 84 138 IPR002100 GO:0003677|GO:0046983
Pste6g02296 148 ProSiteProfiles MADS-box domain profile. 82 142 IPR002100 GO:0003677|GO:0046983
Pste6g02296 148 SMART madsneu2 82 141 IPR002100 GO:0003677|GO:0046983
Pste6g02296 148 CDD MADS_MEF2_like 84 142 IPR033896 GO:0000977|GO:0045944
Pste6g02296 148 Gene3D - 94 145 IPR036879 GO:0003677|GO:0046983
Pste6g02296 148 PANTHER SERUM RESPONSE FACTOR HOMOLOG 84 142 - -
Pste6g02296 148 SUPERFAMILY SRF-like 84 142 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste6g02296 Pste-Chr6 11034964 11037078 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste6g02296 82 142 MADS-box Gene Family AT2G45660 95.082 4.52e-37 122
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Pste6g02296 SRF-TF 4.2e-27 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste6g02296 6 11034964 11037078 Pste6g02296 6 11034964 11037078 ECH
Pste6g02296 6 11034964 11037078 Pste6g02301 6 11079862 11086183 ECH