Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste6g02293 atgcgcagcattataaaaaacggtgacagtgggaacttgaactactcatattatcctgaatctcctctctcagaattcgaaagtcctaatgagaaagaagcgacaagtgtatcatcagtcagcagaatcagtccactgatattacttgtgataataattgtagcagttatattcttcgtgtatggactagtccatttggttctatggtttttcatgaaaaggaggtcctcttcgtctctatacaactccaacaggttccacgaatcccgtgttctccaaagacagcttcaacaactctttcgtctgcacgattcgggtctagaccaagccctcatagatgctttacccgttttctgttaccaagacctgttggggtccaaggaaccgtttgattgtgccgtgtgtttatgtgagttctccgaggacgacaagctgaggttgcttcctatgtgcacacacgcctttcacatgaactgccttgacacgtggcttctctccaactccacctgtcctctctgcagggcctctctccccagtaatgtggagaatcacaatcacaatcacaatcacaatcacaatccaatgtttagtcttggcaactctaattcgttggttctgccaaatggcgaggaagagaataacgggttttctgatagtcaaagatcaatggggaaaagggtgttttctgtgaggcttggaaaattcaggaacaacggattggaaggtggagaggtaggaggaaatggtggctgtagtttgaatgaaaggagatgcttctctatgggttcgtatcggtatgtggttcgtgatttgaatctgcaagttgtcttatctcatcatgtttcggaaaatgggaatgtggacgggaagaggataagcgactcctccaaaggtgatagcttctctgtttccaagatatggctttggtccaagaagaccagatttcatgcttctaatgcacctttcacctga 972 0.0 MRSIIKNGDSGNLNYSYYPESPLSEFESPNEKEATSVSSVSRISPLILLVIIIVAVIFFVYGLVHLVLWFFMKRRSSSSLYNSNRFHESRVLQRQLQQLFRLHDSGLDQALIDALPVFCYQDLLGSKEPFDCAVCLCEFSEDDKLRLLPMCTHAFHMNCLDTWLLSNSTCPLCRASLPSNVENHNHNHNHNHNPMFSLGNSNSLVLPNGEEENNGFSDSQRSMGKRVFSVRLGKFRNNGLEGGEVGGNGGCSLNERRCFSMGSYRYVVRDLNLQVVLSHHVSENGNVDGKRISDSSKGDSFSVSKIWLWSKKTRFHASNAPFT 323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste6g02293 323 SMART ring_2 132 173 IPR001841 -
Pste6g02293 323 CDD RING-H2_EL5-like 131 174 - -
Pste6g02293 323 FunFam RING-H2 finger protein ATL46 94 179 - -
Pste6g02293 323 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 39 307 - -
Pste6g02293 323 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 107 183 IPR013083 -
Pste6g02293 323 Pfam Ring finger domain 131 174 IPR001841 -
Pste6g02293 323 ProSiteProfiles Zinc finger RING-type profile. 132 174 IPR001841 -
Pste6g02293 323 SUPERFAMILY RING/U-box 111 187 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste6g02293 Pste-Chr6 10993394 10994604 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste6g02293 32 320 C3H Transcription Factor Family AT2G18650 38.757 2.03e-52 176
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste6g02293 6 10993394 10994604 Pste6g02293 6 10993394 10994604 ECH
Pste6g02293 6 10993394 10994604 Pste5g03129 5 24363337 24365846 ECH