Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste6g02285 atggtggtaaggtcgtgctcgaatttgtctgacttggtgtctgagcacaatttgaattcccctcaaattcctggagctcttcctcaaaccatgtatgatcctggaattatgtctgatttggatggaaaattaagggatgatggttcaaatgctttctcatcagaacaacatcagaagatcatcatagtagcaaattttcttccgctcaatactcaaaaggataaaatatctggcaaatggtgcttcacttatgatgaagattcaatcttgttgccattaaaggatggtctctcttctgacactgaggtttattacgtgggatctctgaaggttgatgttgatgctagtgaacaagagattgtttctcttcaattactggaggaattcaattgcttgcctacatttattccttcgtacctcaagaaacaattttataatggattctgcaagcaacatttgtggcctctctttcattacatgttgcccttgtatccagactactgcaatcgctttgataagtcacagtggcaggcttatgtttctgctaacaaaatatttgctgataaagtcatggagattattaatccagagcgagattatgtatgggttcatgattatcatcttatggttattgcaacatttctacggaagcggtacaattggatcaagctaggatttttcctccacattccatttccttcatcagaaatttatcgggctttacttgtaagggatgaaattttgaaagcactgcttaatgcagatttaattggttttcatacatttgattacgctcgccactttctttgttgctgcagtcgatttcttggcttaaaatatgaatgcaaaaggggttacatcaagctcgaatactttggtcgtacaatattcattaaaatcttgcctgtagggattcatatggatcgacttcaatctgtcttggaccaccctgctttttcggtcaatgttggaaaaatgttggagaagttcaagggtaaaaaacttattcttggagtcgatgatatggacatttttaaaggtctcaacctaaagctattggccgtagaacaactccttcagcaatatcctgaattgcagggtgaattgatacttgtccagattgtaaatccaccaaggagtactagtaaagatgtagaggaggcaagtaacgagatgcaaattatagccaagaggataaatgaaaggtttggcttgcttgattatgaacctgtcatcatcattaatcgtcatgtttcgttatatgagaaggcatcttactatgctttagcagaatgttgcattgtgaatgcggtgcgagatggtatgaatttggttccttacgagtacattgtctgcaggcaggggaaaatggatgaagctttagatattgattatgagtcccctcgtacaagtgcacttgttgtttctgagtttataggttgctcaccttctcttagcggggcaatcagggtaaacccttgggacattaatgctgtagctgatgcgctgaatttggccatcacaatgcccaatgaagagaaacagttgcgacatgagaaacactttcgatatgttagctctcatgatgtaactcactgggccaaaagttttgttcaagatcttgagtattcatgcaaggatcactatagtaaaaatcgctggggtattggctttggccttaatttcagagttttgtccctttctcctacttttaggaagcttaacaaagcccatgctgtttctgcatatgaaaggacaaattgcagggcattatttttggattatgatggaacagttgtaccttccattgttaaaactcccagccctgaaatcatagatgttctaaataacctttgctgtgaccctaagaacaccgtgtttatagtaagtggaagagggaaaatcatgctgagcgaatggtttgatcattgcgagaatcttggaatagcagctgagcatggttattttctaaaatggagtcaacagtcaacgtgggaaacaaatcatatgagtaccgctttttcttggaaagagattgtcgaacctgtgatgagattgtacactgaggcaacagatggctcctacatagagaccaaagagagtgccttagtatggcactactatgatgctgatcctgattttggatcttggcaagccaagcaattgttggatcaccttgacaatttatctgcaaacgaaccagtaactgtaaagcagggaaaacatataattgaagtcatgtcacaggggattactaaagggttagttgtagaggacattctgtccaagatgaccaagaatggaaaatcgccagattttattctgtgcataggcgatgatagatctgatgaggatatgtttgacagcttgctgaataaagtttacactggagcctcttctcctgcacaagaaatctttgcatgcactgttggtcaaaaaccaagtaaagcgaggtactatctagatgatactgaggatgtaatgaggttacttcaagctcttgctactgtttcagtgcctaaatcaacatgtcctgaagaaaactctttcggaatagcagaagcttgtttcgagaacgtttga 2583 0.0 MVVRSCSNLSDLVSEHNLNSPQIPGALPQTMYDPGIMSDLDGKLRDDGSNAFSSEQHQKIIIVANFLPLNTQKDKISGKWCFTYDEDSILLPLKDGLSSDTEVYYVGSLKVDVDASEQEIVSLQLLEEFNCLPTFIPSYLKKQFYNGFCKQHLWPLFHYMLPLYPDYCNRFDKSQWQAYVSANKIFADKVMEIINPERDYVWVHDYHLMVIATFLRKRYNWIKLGFFLHIPFPSSEIYRALLVRDEILKALLNADLIGFHTFDYARHFLCCCSRFLGLKYECKRGYIKLEYFGRTIFIKILPVGIHMDRLQSVLDHPAFSVNVGKMLEKFKGKKLILGVDDMDIFKGLNLKLLAVEQLLQQYPELQGELILVQIVNPPRSTSKDVEEASNEMQIIAKRINERFGLLDYEPVIIINRHVSLYEKASYYALAECCIVNAVRDGMNLVPYEYIVCRQGKMDEALDIDYESPRTSALVVSEFIGCSPSLSGAIRVNPWDINAVADALNLAITMPNEEKQLRHEKHFRYVSSHDVTHWAKSFVQDLEYSCKDHYSKNRWGIGFGLNFRVLSLSPTFRKLNKAHAVSAYERTNCRALFLDYDGTVVPSIVKTPSPEIIDVLNNLCCDPKNTVFIVSGRGKIMLSEWFDHCENLGIAAEHGYFLKWSQQSTWETNHMSTAFSWKEIVEPVMRLYTEATDGSYIETKESALVWHYYDADPDFGSWQAKQLLDHLDNLSANEPVTVKQGKHIIEVMSQGITKGLVVEDILSKMTKNGKSPDFILCIGDDRSDEDMFDSLLNKVYTGASSPAQEIFACTVGQKPSKARYYLDDTEDVMRLLQALATVSVPKSTCPEENSFGIAEACFENV 860
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste6g02285 860 FunFam Trehalose-6-phosphate synthase 10 717 845 - -
Pste6g02285 860 NCBIfam trehalose-phosphatase 589 835 IPR003337 GO:0003824|GO:0005992
Pste6g02285 860 Gene3D Glycogen Phosphorylase B; 50 311 - -
Pste6g02285 860 Gene3D Glycogen Phosphorylase B; 312 526 - -
Pste6g02285 860 FunFam Alpha,alpha-trehalose-phosphate synthase 313 526 - -
Pste6g02285 860 FunFam alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6 52 311 - -
Pste6g02285 860 NCBIfam HAD-IIB family hydrolase 591 788 IPR006379 -
Pste6g02285 860 PANTHER TREHALOSE-6-PHOSPHATE SYNTHASE 34 835 IPR001830 GO:0003824|GO:0005992
Pste6g02285 860 CDD GT20_TPS 59 542 IPR001830 GO:0003824|GO:0005992
Pste6g02285 860 FunFam alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6 588 703 - -
Pste6g02285 860 SUPERFAMILY HAD-like 589 835 IPR036412 -
Pste6g02285 860 Pfam Glycosyltransferase family 20 59 542 IPR001830 GO:0003824|GO:0005992
Pste6g02285 860 Gene3D - 588 702 IPR023214 -
Pste6g02285 860 Gene3D - 718 848 IPR023214 -
Pste6g02285 860 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 59 545 - -
Pste6g02285 860 CDD HAD_TPP 590 829 - -
Pste6g02285 860 Pfam Trehalose-phosphatase 592 824 IPR003337 GO:0003824|GO:0005992
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste6g02285 Pste-Chr6 10953791 10970542 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste6g02285 1 860 Trehalose Biosynthesis Gene Families AT1G23870 63.048 0.0 1149
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste6g02285 6 10953791 10970542 Pste2g00194 2 1019317 1025472 PCT