Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste6g02279 ATGGACAATTATGGGTCTTCACAGCATCCATATGAATATGGGTATCCAAACCCTTATCATATGTACCCTGGCCACACCCCTCCATACCCTCCTCCTGATCCATATGCACATGCACATGCACAAGCACAAGCACAAGCACATCCACCAGACCCTTCATATTCCTTCAACTACTCACACCCCCCATCCCCTTATTCTAGCCACATAGACTATTCCTCATACCCTCCTCCTCCTCCTCCTCCTCCTACCTCTGCTCCTGGCTTCTTTGACTATCCCGGGCCTCAGTCTCCTCACTCTTATCCTTACCCTCACCAAGTGCCTCCAGAATGGAGTGTCACAGGAGGTGGAGTGTCTCACACTAGTGATAGTTACAACCCTCCTCTCTCTTCTGCTTACCCTCCTTTGGATGATCTCATGACCAATGTTAGCTTGTCTGATAATATCCTCCCTAGTGCTCCTCCCTTGACACATTCCCCTCCAGTTTCAAATCATGACAACCGTGATAAGTTTTATGGTTATTCTAACTCCTCCTCCTCAAGTTTGGATCAGGGTGATCCTTCTAGACTTTCAGTTCATGCCCCTCGCTTGAGACATTCCACTTCAATTTCAAATCATCAGAACAGACATGACTTTTATGGCTATTCTAACTCCTCCTCCTCGAGTTTGGATCAGGGTGGTCCTCCTAACCTCCCAAGTGCCCCTCGCTTGAGACATTCCACTTCAATTTCAAATCATGAAAACAGAGATGAGTTTTATGGTTACTCTAACTACTCCTCTTCAAGGTTGGATCAGGGTGATCCTCCTAACCTCCCAAATGCCCCTCGCTTGAGACATTCCACTTCAATTTCAAATCATGAGAACAGAGATGAGTTTTATTATTATTCTAACTCCTTCTCCTCAAGTTTCAATCAAGGTGATCCTCCTAGACTTTCAGTTCATTCTGATGACTCAGTGAATAGTCAGAATCTGCAGATTGTGCCAGTTCAGCACAAACAGTCTCTCAGAGTTTTGCTCCTGCATGGGAATTTAGATATTTGGGTTCATGGAGCCAAAAACCTTCCAAACATGGACATGTTCCACAAGACTTTGGGGGATGTGTTTGGGAGATTCGAAGGAACAGTGAACCAGAAAATTACTAGTGATCCTTATGTGACAATTTCTGTGTCAAATGCTGTAATAGGGAGAACTTTTGTGATTAGCAATAGTGAGAATCCTGTGTGGGAGCAACATTTCAATGTTCCTGTTGCACATCATGCTGCTGAAGTTCATTTTGTTGTGAAAGACAGTGATGTGGTGGGTTCACAGCTCATTGGCGTTGTTGCAATTCCTGTGGAACAAATATACTCAGGGGAAAAGGGGCAAGGGACCTACCCTATCCTGAATAGCAATGGGAAGCCTTGTAAGCAAGGTGCTGTCTTGAGTGTATCCATTCAATACACTCCAATGGAGAAACTTATATTTTATAATCAAGGAGTTGGAGCTGGTCCTGACTACAGTGGTGTTTCAGGCACATATTTTCCATTGAGGAAAGGTGGAATGGTTACACTATATCAAGATGCTCATGTTCCAGATGGTTCCCTCCCTAATATTGTGCTTGGCAATGGCATGTATTATGCTCATGGAAAGTGTTGGCAAGACATCTTTGATGCCATAAGTCAAGCTCAGCGATTGGTTTACATTACGGGGTGGTCAGTGTGGCACAAAGTTATGTTAGTGCGAGATGCTGGCCATGCTTCAAAGTTCACCTTAGGTGAGCTTCTGAGGTCTAAGTCATCAGAAGGAGTAAGAGTGCTTCTCCTTGTTTGGGATGATCCTACATCAAGAAGCATCCTCGGTTACAAAGTGGATGGTGTAATGGCAACTCATGATGAGGAAACTAGACGATTTTTCAAGCACTCTTCTGTGCAAGTGCTGCTTTGTCCTCGGATTGCTGGAAAACGACATAGCTGGGCCAAACAAAAGGAAGTGGGAACAATATATACACATCATCAGAAAACAGTAATTGTAGATGCTGATGCTGGAAATGACGAAAGAAAAATTGTAGCATTTGTTGGCGGACTTGATTTGTGTGATGGGCGATATGATACTCCCCACCATCCTCTCCTTAGGACACTGCAGACACTGCATAAGGATGATTATCACAACCCTACTTTTACGGGTAGTACCGGTGGTTGTCCACGGGAGCCATGGCATGACTTGCATTCTAAAATTGATGGTCCAGCAGCTTACGATGTTTTGAAAAACTTTGAGGAGCGCTGGTTAAGAGCTGCAAATCCTAAAGGGATTAAGAAGTTGAGGAGTTCATATGATGATGCATTGCTTAAGCTAGACAGAATCCGAGATATTATCTGTGCATCTAATGCTCCTTGTGTTAGTGATGATAATCCTGAATCATGGCATGTTCAGATTTTCCGTTCAATTGATTCAAATTCTGTTAAGGGATTTCCAAAGGAGCCAAAAGATGCATCAAGCTTGAATCTAGTATGTGGGAAGAATGTGCTGATTGACATGAGCATACATACTGCATATGTAAAGGCTATTCGTGCTGCACAACATTACATTTATATAGAGAATCAGTATTTCATTGGGTCTTCATATAATTGGAGTCATCATAAAGATCTTGGTGCTAATAATTTAATTCCTATGGAAATTGCACTGAAGATTGCTGCAAAGATAAGGGCAAATGAGAGATTTGCAGTGTACATTGTTATTCCAATGTGGCCTGAGGGTGTTCCAACAGGTGCTGCCACCCAAAGAATTCTATTTTGGCAGCATAAAACAATGCAAATGATGTATGAGACAATTTACAAGGCTTTGGTTGAAGTTGGGCTTGAAGCAGCATTCTCTCCACAGGACTATTTGAACTTTTTCTGTCTTGGAAATCGAGAGGCAATAGATATGCATGACAATATCACTGTGTCTGGAAATCCTCCGCCTGCAAATAGTCCACAAGTACGAACTCTATGCTACTCCTTATTCCCTCTTCCCTTCTCAGTTAACATTTTTCTGCTTCCATATTACCATGAAACAGTGAGTTTTTTATGA 3042 0.4277 MDNYGSSQHPYEYGYPNPYHMYPGHTPPYPPPDPYAHAHAQAQAQAHPPDPSYSFNYSHPPSPYSSHIDYSSYPPPPPPPPTSAPGFFDYPGPQSPHSYPYPHQVPPEWSVTGGGVSHTSDSYNPPLSSAYPPLDDLMTNVSLSDNILPSAPPLTHSPPVSNHDNRDKFYGYSNSSSSSLDQGDPSRLSVHAPRLRHSTSISNHQNRHDFYGYSNSSSSSLDQGGPPNLPSAPRLRHSTSISNHENRDEFYGYSNYSSSRLDQGDPPNLPNAPRLRHSTSISNHENRDEFYYYSNSFSSSFNQGDPPRLSVHSDDSVNSQNLQIVPVQHKQSLRVLLLHGNLDIWVHGAKNLPNMDMFHKTLGDVFGRFEGTVNQKITSDPYVTISVSNAVIGRTFVISNSENPVWEQHFNVPVAHHAAEVHFVVKDSDVVGSQLIGVVAIPVEQIYSGEKGQGTYPILNSNGKPCKQGAVLSVSIQYTPMEKLIFYNQGVGAGPDYSGVSGTYFPLRKGGMVTLYQDAHVPDGSLPNIVLGNGMYYAHGKCWQDIFDAISQAQRLVYITGWSVWHKVMLVRDAGHASKFTLGELLRSKSSEGVRVLLLVWDDPTSRSILGYKVDGVMATHDEETRRFFKHSSVQVLLCPRIAGKRHSWAKQKEVGTIYTHHQKTVIVDADAGNDERKIVAFVGGLDLCDGRYDTPHHPLLRTLQTLHKDDYHNPTFTGSTGGCPREPWHDLHSKIDGPAAYDVLKNFEERWLRAANPKGIKKLRSSYDDALLKLDRIRDIICASNAPCVSDDNPESWHVQIFRSIDSNSVKGFPKEPKDASSLNLVCGKNVLIDMSIHTAYVKAIRAAQHYIYIENQYFIGSSYNWSHHKDLGANNLIPMEIALKIAAKIRANERFAVYIVIPMWPEGVPTGAATQRILFWQHKTMQMMYETIYKALVEVGLEAAFSPQDYLNFFCLGNREAIDMHDNITVSGNPPPANSPQVRTLCYSLFPLPFSVNIFLLPYYHETVSFL 1013
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste6g02279 1013 PANTHER PHOSPHOLIPASE D 331 966 IPR015679 -
Pste6g02279 1013 MobiDBLite consensus disorder prediction 193 226 - -
Pste6g02279 1013 MobiDBLite consensus disorder prediction 70 87 - -
Pste6g02279 1013 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 338 480 IPR035892 -
Pste6g02279 1013 FunFam Phospholipase D delta 533 771 - -
Pste6g02279 1013 MobiDBLite consensus disorder prediction 113 127 - -
Pste6g02279 1013 MobiDBLite consensus disorder prediction 149 281 - -
Pste6g02279 1013 Pfam C2 domain 340 458 IPR000008 -
Pste6g02279 1013 Gene3D Endonuclease Chain A 805 955 - -
Pste6g02279 1013 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 657 692 IPR001736 GO:0003824
Pste6g02279 1013 MobiDBLite consensus disorder prediction 47 69 - -
Pste6g02279 1013 CDD C2_plant_PLD 335 479 - -
Pste6g02279 1013 SUPERFAMILY Phospholipase D/nuclease 784 934 - -
Pste6g02279 1013 ProSiteProfiles C2 domain profile. 319 456 IPR000008 -
Pste6g02279 1013 MobiDBLite consensus disorder prediction 22 131 - -
Pste6g02279 1013 SUPERFAMILY Phospholipase D/nuclease 501 756 - -
Pste6g02279 1013 SMART C2_3c 341 455 IPR000008 -
Pste6g02279 1013 MobiDBLite consensus disorder prediction 167 185 - -
Pste6g02279 1013 Gene3D Endonuclease Chain A 534 773 - -
Pste6g02279 1013 MobiDBLite consensus disorder prediction 233 265 - -
Pste6g02279 1013 Pfam Phospholipase D Active site motif 658 692 IPR001736 GO:0003824
Pste6g02279 1013 Gene3D C2 domain 335 472 IPR035892 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste6g02279 Pste-Chr6 10924842 10932240 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste6g02279 270 988 Phospholipase D Gene Family (Wang group) AT2G42010 75.683 0.0 1130