Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste6g02268 atgagtgaaagggataggcgaatgttgtcattcccggcggttcacccctgcgaaggcatatcgccgccgacacttgtagcgtctctgatcagtctctcccaatccatatgcagttacgaaccccaagaattccaaacccaacgccacaacgcaagggaaacaatacgccaaatcggcatcgttttaatgttccttgaagaacttgaagacagcgccttacaaatcccgagctccgcagtcctctgcctcgccgagctccacttcaccttccaaaagatccacttcttaatgcaagactgcaccctccaagctgcgcgcctcctaatgctggccaaatccgaactcgtcgcttcccaattccgtgccctcattcgcgccgtcgccacttccctcgacgttttgcctcttcaccacttccacctctgcgctgacgtcaccgagctaacccagttagtaaccaagcaagccagcaaggccaccttccaactggaccccagcgacgctcgtctcaccaacacactccactccgttctgtgccacttctcccgtggaacagaacccgacctcatctccctccaccaaatcctccactaccttcaaattacaacctggaccgattgtaacactcagattcatttcctacaagaggaaatcagtttagagtgtcgccatcgtcaagacaaacagcttccgttactcagtagcttggtagccttcttgagttactgcaggggagtgattttccaaattatacaagacacccaacccagatgcaccacgccgttcaatttaacgtccgttaaccctcaggatttccgttgccccatttccctcgacttgatgacggatcccgtaacggtatccacgggtcaaacctacgaccgagcctccattcagaaatggctcaaagccgggaacagcacatgccccaaaacaggggagaagctaacaaacacagacttagttcccaacacaacgctcaagagactcatccaacacttctgcgcccacaacggcatttccttgttcaactcatgcaaccataagaacaacaccgtcgccggtagtcccgcggcggcgcacgccatgcaattcctggcgtggtttctgactcggaggctggccttcggaacggaagaacagaagcacaagggcgcgtacgagattcgcgtgcttgccagaaccagcattttcaacagagggtgtttgattgaaatgggaacagtgcctcctctgttggaccttctgagctctgccaatgataaatccacgcaagagaacacaatatctgctctattgaagctctcaaaacatccaaacggaccaaaaagtatcatagagagtgggagcgtaaatgcaattctgtgggtgttaaaaaatggactcaccctggaagctcgccaaattgcggctgctaccatattttatctctcatcggtgaaagagtacgcggaatcaataggggaaaacccggaagtgattccggctttggtggagttggttaaggaaggaagaacctgcgggagaaagaatgcagtggtggctattttcgggttactttcacttcctaggaatcaccaaagggtactggctgctgacgctgttcccgcgcttcttgacattttgtcttcttcttcagataaggagcaacttatagctgaagctttggctgttcttgcagccttggccgagaatgttgaaggggcacgtgctatattgcagggttccgctttgcccttgaccgtggggatgctacgatctgccacctcacgtgctgccaaagagcactcagcttccattttgttgtccctttgcgtcaatggtggcccggaggtagtggcggttcttgccaaagacccctcgctcatgcctttgctctattcgcttcttgcggaagcatattctcatgccgcaaagaaagcgcgcttcctcatcaaagttatacaagatttccacgagactagaacttctggactcaagggttcctcgcctccgcaagaaccatcgcttcacgtttggtga 2022 0.0 MSERDRRMLSFPAVHPCEGISPPTLVASLISLSQSICSYEPQEFQTQRHNARETIRQIGIVLMFLEELEDSALQIPSSAVLCLAELHFTFQKIHFLMQDCTLQAARLLMLAKSELVASQFRALIRAVATSLDVLPLHHFHLCADVTELTQLVTKQASKATFQLDPSDARLTNTLHSVLCHFSRGTEPDLISLHQILHYLQITTWTDCNTQIHFLQEEISLECRHRQDKQLPLLSSLVAFLSYCRGVIFQIIQDTQPRCTTPFNLTSVNPQDFRCPISLDLMTDPVTVSTGQTYDRASIQKWLKAGNSTCPKTGEKLTNTDLVPNTTLKRLIQHFCAHNGISLFNSCNHKNNTVAGSPAAAHAMQFLAWFLTRRLAFGTEEQKHKGAYEIRVLARTSIFNRGCLIEMGTVPPLLDLLSSANDKSTQENTISALLKLSKHPNGPKSIIESGSVNAILWVLKNGLTLEARQIAAATIFYLSSVKEYAESIGENPEVIPALVELVKEGRTCGRKNAVVAIFGLLSLPRNHQRVLAADAVPALLDILSSSSDKEQLIAEALAVLAALAENVEGARAILQGSALPLTVGMLRSATSRAAKEHSASILLSLCVNGGPEVVAVLAKDPSLMPLLYSLLAEAYSHAAKKARFLIKVIQDFHETRTSGLKGSSPPQEPSLHVW 673
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste6g02268 673 SMART arm_5 395 437 IPR000225 GO:0005515
Pste6g02268 673 SMART arm_5 521 564 IPR000225 GO:0005515
Pste6g02268 673 SMART arm_5 438 479 IPR000225 GO:0005515
Pste6g02268 673 FunFam RING-type E3 ubiquitin transferase 267 342 - -
Pste6g02268 673 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 407 450 IPR000225 GO:0005515
Pste6g02268 673 Pfam U-box domain 269 338 IPR003613 GO:0004842|GO:0016567
Pste6g02268 673 ProSiteProfiles U-box domain profile. 267 341 IPR003613 GO:0004842|GO:0016567
Pste6g02268 673 PANTHER U BOX DOMAIN-CONTAINING 50 646 - -
Pste6g02268 673 Gene3D - 334 656 IPR011989 -
Pste6g02268 673 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 263 333 IPR013083 -
Pste6g02268 673 SUPERFAMILY RING/U-box 269 343 - -
Pste6g02268 673 SMART Ubox_2 271 334 IPR003613 GO:0004842|GO:0016567
Pste6g02268 673 FunFam RING-type E3 ubiquitin transferase 344 659 - -
Pste6g02268 673 Pfam Armadillo/beta-catenin-like repeat 399 436 IPR000225 GO:0005515
Pste6g02268 673 SUPERFAMILY ARM repeat 374 647 IPR016024 -
Pste6g02268 673 CDD RING-Ubox_PUB 269 321 IPR045210 -
Pste6g02268 673 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 533 577 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste6g02268 Pste-Chr6 10858755 10861176 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste6g02268 6 673 U-box Gene Family AT1G60190 39.390 9.60e-160 474
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste6g02268 6 10858755 10861176 Pste6g02268 6 10858755 10861176 ECH