LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pste6g02254	ATGGCTGGAGCTGAAGCTACAAAATATGCTTCTGTTACAAGTCCTAAAACTACTGCTACAAGCAACTTGGCTTCTAAATCGAACAAGCCAACCATGAGAAGGTTCATTGGGGTGAGGCAAAGACCCTCAGGAAGATGGGTGGCTGAGATCAAGGACTCTTCACAGCATGTGAGGTTGTGGCTTGGAACCTATGACACACCAGAAGAGGCTGCAAGGGCTTATGATGAAGCAGCAAGAGCTCTGAGAGGTGAAAATGCTCGAACAAACTTTGCACCATTGACCCAATTGGCCACAGGCTCTAACATACCAACTGGGTCTGATGGGAAGCATGGCTTGAGCTTTGCTTCCTTGAAGGCTAAGTTGAGCAAGAATCTTCAGAACATTATGGCAAGGGCAAGTGATCACAACAAGTCCTCAAAGAGTAGGGTGAGTGACCACTTCACCTTCGCCAGCATCTTCCACCGCCGGAGTTACCAAATCCCTGAAGGGGACATGATGAGGAACATTGAGAAAGTGGTGCAGCCTAGTGTTATTGTGCCTCCTATGGAAGGTGCTGTTGATTACTCCTCTGTTGCTAACTGGGAAAGTGCTTCTAGTGTTTCCGACTGCAGTTCCGAGTGGGTCGGGTTCGGATCGAAAATTGGGTTGGAGTCGGACGGGTCGGATCTTGGGGAGGCTAGTGTTGGTGATCAAGGGTTGTTGGAGCAGTTGATGGGGTGGGTTGAAAGCCCTGATGTTAGTGATCAAAGTGAGGGTTCAAGGAGTAAGAGGTTCAAGGTGTCTTCTTCTGTGCTTGTGCCACCAACTTTCACAGGCTCTCCTTATGATTGTGGTTCCCCTTATAGCGGTTATGCCTCTCCTTATAACGGTTATGCCTCTCCATATAACAACAGTTGGTCCTCCCCTTGCAATGGTTATGCTTCTCCCTATGACAATAACAAGTGA	945	0.4825	MAGAEATKYASVTSPKTTATSNLASKSNKPTMRRFIGVRQRPSGRWVAEIKDSSQHVRLWLGTYDTPEEAARAYDEAARALRGENARTNFAPLTQLATGSNIPTGSDGKHGLSFASLKAKLSKNLQNIMARASDHNKSSKSRVSDHFTFASIFHRRSYQIPEGDMMRNIEKVVQPSVIVPPMEGAVDYSSVANWESASSVSDCSSEWVGFGSKIGLESDGSDLGEASVGDQGLLEQLMGWVESPDVSDQSEGSRSKRFKVSSSVLVPPTFTGSPYDCGSPYSGYASPYNGYASPYNNSWSSPCNGYASPYDNNK	314

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pste6g02254	314	Pfam	AP2 domain	34	83	IPR001471	GO:0003700\|GO:0006355
	Pste6g02254	314	FunFam	ethylene-responsive transcription factor RAP2-11	33	92	-	-
	Pste6g02254	314	ProSiteProfiles	AP2/ERF domain profile.	34	91	IPR001471	GO:0003700\|GO:0006355
	Pste6g02254	314	PANTHER	SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR	12	145	-	-
	Pste6g02254	314	MobiDBLite	consensus disorder prediction	10	29	-	-
	Pste6g02254	314	Gene3D	AP2/ERF domain	33	92	IPR036955	GO:0003700\|GO:0006355
	Pste6g02254	314	CDD	AP2	34	91	IPR001471	GO:0003700\|GO:0006355
	Pste6g02254	314	SMART	rav1_2	34	97	IPR001471	GO:0003700\|GO:0006355
	Pste6g02254	314	MobiDBLite	consensus disorder prediction	1	30	-	-
	Pste6g02254	314	SUPERFAMILY	DNA-binding domain	35	91	IPR016177	GO:0003677
	Pste6g02254	314	PRINTS	Ethylene responsive element binding protein signature	35	46	IPR001471	GO:0003700\|GO:0006355
	Pste6g02254	314	PRINTS	Ethylene responsive element binding protein signature	57	73	IPR001471	GO:0003700\|GO:0006355

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pste6g02254	Pste-Chr6	10766377	10767321	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pste6g02254	13	91	AP2-EREBP Transcription Factor Family	AT5G19790	63.291	2.26e-26	103

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	AP2/ERF-ERF	Pste6g02254		AP2	1.1e-15	CL0081