Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste6g02249 ATGACATTTGCTCAGTGTTCAATTTCCAACATGTTTCAACATAGAAACCATGATGATTTCGCAACTGTGGCAGGATTTGCTTTTGTCTACATGGAAGATGAACGTGATGCTGAGTATGCAATAAGAAGGCTTGATAGAACAGAATTTGGTAGAAAGGGACGCCGTATTCGCGTTGAGTGGACTAAGCAAGAACGTGACAGTAGAAGGTCAAGTGATTCCAGAAAATCTTCATCTAATTCAAGACCATCAAAGACATTGTTTGTTATAAATTTTGATCCTGTTCACACCAGGACAAGGGATCTGGAGAGACATTTTGATCCCTATGGGAAAATATTAAATATAAGGATCAGAAGGAATTTTGCTTTTATTCAGTATGAATCCCAGGAGGATGCTACTCGAGCTTTGGATTCAACCAACTTGAGCAAGTTTATGGACCGTGTTATCACAGTGGAGTACGCCATAAGAGATGATGATGACAGGGACAGAAGGAATGGATATAGTCCTGATAGAAGAGGTCATGACTCTCCTGACGGAAGATATGGTCGTGGTAGATCCCCTAGTCCATACAAGAGAGGTAGAGGTAGCCCTGATTATGGCCATGGATCAAATCCATCTTCCAGACCAGACCCAAGAGGAAGCCCCAAGTATGAACGAGCTGAAAGCCCAATAAACGGGAGATATGACAGCCGGTCTCCTCCTCCACCCCGAGATAGGTCTCGGTCTCGATCCCGATCCTGAAGAAAAGCTGAATAGAACTGTCTGTGAAATTACTGTTAGACCATTTTAATTCCGTTTGTGTTTTTTTGTGTTTGGTTTGGTTTGAACCTTAATGTGCGTTGTGCAAAAGAACATTGTATTAGATTTTATTATGTTACCCATCAAGTTTTAGGATTTTTATTCTGTTAGATGATTTTTTGTTTGTTTTGTTTTATCATAATTTAAACTAGAAGGTAAGCCTGATCCCTCATTGTGTACGGTTCATCATATGTCGTAGAGGCTTTATTGTCAC 1009 0.4034 MTFAQCSISNMFQHRNHDDFATVAGFAFVYMEDERDAEYAIRRLDRTEFGRKGRRIRVEWTKQERDSRRSSDSRKSSSNSRPSKTLFVINFDPVHTRTRDLERHFDPYGKILNIRIRRNFAFIQYESQEDATRALDSTNLSKFMDRVITVEYAIRDDDDRDRRNGYSPDRRGHDSPDGRYGRGRSPSPYKRGRGSPDYGHGSNPSSRPDPRGSPKYERAESPINGRYDSRSPPPPRDRSRSRSRS 245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste6g02249 245 SUPERFAMILY RNA-binding domain, RBD 72 164 IPR035979 GO:0003676
Pste6g02249 245 MobiDBLite consensus disorder prediction 61 82 - -
Pste6g02249 245 MobiDBLite consensus disorder prediction 61 75 - -
Pste6g02249 245 MobiDBLite consensus disorder prediction 158 180 - -
Pste6g02249 245 Gene3D - 9 75 IPR012677 -
Pste6g02249 245 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 1 63 IPR000504 GO:0003723
Pste6g02249 245 Gene3D - 76 166 IPR012677 -
Pste6g02249 245 SUPERFAMILY RNA-binding domain, RBD 24 77 IPR035979 GO:0003676
Pste6g02249 245 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 84 155 IPR000504 GO:0003723
Pste6g02249 245 FunFam serine/arginine-rich splicing factor RS41 isoform X2 76 207 - -
Pste6g02249 245 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 22 99 - -
Pste6g02249 245 SMART rrm1_1 85 151 IPR000504 GO:0003723
Pste6g02249 245 SMART rrm1_1 5 59 IPR000504 GO:0003723
Pste6g02249 245 MobiDBLite consensus disorder prediction 231 245 - -
Pste6g02249 245 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 24 52 IPR000504 GO:0003723
Pste6g02249 245 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 86 148 IPR000504 GO:0003723
Pste6g02249 245 MobiDBLite consensus disorder prediction 158 245 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste6g02249 Pste-Chr6 10756863 10758638 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste6g02249 25 162 Eukaryotic Initiation Factors Gene Family AT1G49760 27.027 5.47e-09 54.3