Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste6g02247 ATGGTGGAAGCTACTAAAGATATGGTAGAAGTTGATGCCAGTTCCATAGAAGACTGGTTGTTGCATGCGCAGGAACTTGTTCCTGTTGCTCTTGCTAAGGCAAGAGAGGTTAAGGGGTTCCCTGGAAGGTGGAAAGTGATCATTTCAAAATTGGAGCAGATTCCGTCACGTTTATCGGACTTGTCTAGCCATCCTTGTTTCTCCAAGAATGCTCTTTGCAAGGAGCAATTACAGGCTGTGTCTAGGACACTTAAAGAGGCTGTGGAATTGGCTGAGTTGTGTGTGAAGGAGAAGTATGAGGGCAAGCTACGGATGCAGAGTGATCTTGATGCATTAACGGGGAAACTGGATTTGAATTTGAAGGATTGTGGTCTCTTGATCAAGACCGGAGTGCTGGGTGAAGCTACTTTGCCATTAACTGTGTTAAGTTCTATGGCAGAATTGGATATTACAACGCACAACAATATAAGAGAACTACTTGCGCGCCTTCAGATTGGTCACTTGGAAGCAAAGCACAAAGCCTTAGACAGACTCTATGATATTATGAAAGAGGATGAGAAGAATGTTTTGGCTGTTCTTGGCAGGAGCAATGTTGCTGCTTTGGTTCAATTGCTCACAGCAACATCTCCACGGATAAGGGAGAAGACAATCAGTGTTATATGCTCTCTTGTGGAATCAGGGAGCTGTGAGAAGTGGCTAGTTTCTGAAGGAGTTCTGCCACCTCTTATAAGACTTGTCGAATCTGGTAGTGCTGTGGGTAAGGAGAAAGCTACGGTATCTCTTCAGAGATTATCAATGTCGGCAGAGACAACGCGTGCAATTGTTGGACATGGTGGCATTCGGCCATTGATTGAGCTTTGTCAAAGCGGCGATTCTGTGTCACAGGCTGCAGCTGCCTGTACTTTGACAAATGTATCAGCTGTTCCTGAGGTGAGACAGGCATTGGCTGAGGAAGGAATTGTGAAGCTTATGATCAATCTTCTTAATTGTGGAATTTTATTAGGTTCCAGGGAGTATGCAGCAGAGTGCCTGCAGAATCTCACTTCAAGCAATGAGCATCTGAGAAAGTCTGTCATATCAGAAGGTGGTGCTAGGAGTCTTCTGGCCTATCTTGACGGACCACTTCCCCAAGAATCAGCAGTTGGAGCATTGAGAAATCTGGTTGGGTCAGTTTCTGAGGGAACTTTGGTTTCCCTTGGTTTGCTTCCCCGCTTGGTTCACGTGCTGAAGTCCGGATCGTTGGGTGCTCAACAAGCCGCTGGGTCTATCATCTGCCGCATTTGCAGCTCAATGGAGATGAAGAAAATAGTTGGTGAAGCTGAGTGCATCCCTCTTCTTATAAAGATGCTTGAGGCTAAAGCAAATAATGCTAGAGAGGTTGCTGCTCAAGCGATTTCAAGCCTAATGGTTCTGTCCCAGAACCGCAGAGAAGTTAAGAAGGATGATAAAAGTGTGCCTAATCTAGTTCAGTTGCTTGATCCAAGCCCTCAAAATACTGCAAAAAAATATGCAGTTTCTTGCCTCGGAGCACTTTCTCCAAGTAAGAAATGTAAGAAACTGATGATCTCATATGGAGCAATAGGGTATCTGAAGAAGCTCACAGAGATGGACATTCCAGGAGCGAAAAAGCTACTTGAGCGGTTGGAAAGAGGCAAATTGAGAAGCTTGTTCAGCAGAAAGTAG 1683 0.4504 MVEATKDMVEVDASSIEDWLLHAQELVPVALAKAREVKGFPGRWKVIISKLEQIPSRLSDLSSHPCFSKNALCKEQLQAVSRTLKEAVELAELCVKEKYEGKLRMQSDLDALTGKLDLNLKDCGLLIKTGVLGEATLPLTVLSSMAELDITTHNNIRELLARLQIGHLEAKHKALDRLYDIMKEDEKNVLAVLGRSNVAALVQLLTATSPRIREKTISVICSLVESGSCEKWLVSEGVLPPLIRLVESGSAVGKEKATVSLQRLSMSAETTRAIVGHGGIRPLIELCQSGDSVSQAAAACTLTNVSAVPEVRQALAEEGIVKLMINLLNCGILLGSREYAAECLQNLTSSNEHLRKSVISEGGARSLLAYLDGPLPQESAVGALRNLVGSVSEGTLVSLGLLPRLVHVLKSGSLGAQQAAGSIICRICSSMEMKKIVGEAECIPLLIKMLEAKANNAREVAAQAISSLMVLSQNRREVKKDDKSVPNLVQLLDPSPQNTAKKYAVSCLGALSPSKKCKKLMISYGAIGYLKKLTEMDIPGAKKLLERLERGKLRSLFSRK 560
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste6g02247 560 Coils Coil 447 467 - -
Pste6g02247 560 SMART arm_5 390 429 IPR000225 GO:0005515
Pste6g02247 560 SMART arm_5 351 389 IPR000225 GO:0005515
Pste6g02247 560 SMART arm_5 308 349 IPR000225 GO:0005515
Pste6g02247 560 SMART arm_5 471 513 IPR000225 GO:0005515
Pste6g02247 560 SMART arm_5 185 225 IPR000225 GO:0005515
Pste6g02247 560 SMART arm_5 267 307 IPR000225 GO:0005515
Pste6g02247 560 SMART arm_5 430 470 IPR000225 GO:0005515
Pste6g02247 560 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 237 279 IPR000225 GO:0005515
Pste6g02247 560 PANTHER ARM REPEAT SUPERFAMILY PROTEIN 16 558 - -
Pste6g02247 560 SUPERFAMILY ARM repeat 156 537 IPR016024 -
Pste6g02247 560 Pfam Armadillo/beta-catenin-like repeat 269 307 IPR000225 GO:0005515
Pste6g02247 560 Gene3D - 153 550 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste6g02247 Pste-Chr6 10750556 10752238 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste6g02247 206 479 U-box Gene Family AT3G54790 27.240 2.87e-16 80.5