Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste6g02227 atggaattggaatgttatgggctcgaatctaagaaggggttctggagttcggaggaagataaggttctaactgagtgcgtaaacaaatatggaactgggaagtggaatcggattcctaaactcacagggttgaagagaagcggcaaaagttgcagactgagatggatgaattatctcagtcccgatgttaagcgtggagatttctcagaggaagaacgagaccttgttattcggcttcacaatctccttggaaataggtggtctttgattgcggggaggattcccgggaggacagacaaccaagtgaagaattattggaacactcatttaagcaagaagttaggagttaataagaagaaaaagagaaaagtttttggccatccaaaaagtatccctatagttgaaacaaagggtaattgcattagcgcatcaaagagtgctgtggaggtggagttggatgattcattagagttcattgctcaaggtcaccatgaaagctccactcgtgatctaaatctaatcgactttacaagcacgtgtgagggaatagctgcagatgattttgactgtaacttttcttttcctcacactttgtttgatccacgcagtgctccttactctttttttggcctttga 636 0.0 MELECYGLESKKGFWSSEEDKVLTECVNKYGTGKWNRIPKLTGLKRSGKSCRLRWMNYLSPDVKRGDFSEEERDLVIRLHNLLGNRWSLIAGRIPGRTDNQVKNYWNTHLSKKLGVNKKKKRKVFGHPKSIPIVETKGNCISASKSAVEVELDDSLEFIAQGHHESSTRDLNLIDFTSTCEGIAADDFDCNFSFPHTLFDPRSAPYSFFGL 211
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste6g02227 211 ProSiteProfiles Myb-like domain profile. 7 59 IPR001005 -
Pste6g02227 211 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 11 59 IPR017930 -
Pste6g02227 211 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 7 133 - -
Pste6g02227 211 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 60 114 IPR017930 -
Pste6g02227 211 Pfam Myb-like DNA-binding domain 65 110 IPR001005 -
Pste6g02227 211 Pfam Myb-like DNA-binding domain 13 59 IPR001005 -
Pste6g02227 211 SUPERFAMILY Homeodomain-like 10 106 IPR009057 -
Pste6g02227 211 FunFam Myb transcription factor 12 64 - -
Pste6g02227 211 ProSiteProfiles Myb-like domain profile. 60 110 IPR001005 -
Pste6g02227 211 Gene3D - 66 130 - -
Pste6g02227 211 FunFam Transcription factor WER 66 135 - -
Pste6g02227 211 SMART sant 11 61 IPR001005 -
Pste6g02227 211 SMART sant 64 112 IPR001005 -
Pste6g02227 211 CDD SANT 15 59 IPR001005 -
Pste6g02227 211 CDD SANT 68 110 IPR001005 -
Pste6g02227 211 Gene3D - 12 64 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste6g02227 Pste-Chr6 10601868 10603002 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste6g02227 9 116 MYB Transcription Factor Family AT5G40330 74.074 1.34e-56 177
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pste6g02227 Myb_DNA-binding 1.1e-14 CL0123