Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste6g02210 atgattccatgctcgaggccaatgacagagaggaggctaagaccaccgccagagcaagccctcaagtgccccaggtgtgaatcaacacataccaagttctgttactacaacaactacagtctctctcagcccaggtatttctgcaagacatgtagaaggtattggaccaaaggaggcactcttaggaacattcctgttggtggtggttgcagaaagaacaagaaggtttctactaagaaacacaatgaccaaccagctattaatcaaaaccaagcacacgctgggccctcttatgttcataatcagaaagaccttcaacttcctttcctagatgtgcaattttcccacctcaacaatttacttgggactaatgttggggcactgggaaaccctaattttatggagagtaagtataacatgggcatgcttgagaaccctaggcctattgacttcatggaaagcaggttggatggcggtatgaatatgattaggaattcttctaggagttttgagcttcttgaaaatggtgatatgagtgtgggtggtggtgttgggtttggtgatatgaatggatacagtggattgccattgaattatcaaggtctttcctctcaagcatttggggcaatgtctctagatggaagcattggcaatgttggaacttatataatggactcttgccagcgacttatgttgccttatgatggaggtgataacaccctcaatggttcaattgatgtgaagccaaaccctaagctgttgtcccttgaatggcaagatcagggtagctctgatgctgaaaaattgtcactggggtatattaatggttcaggatcatggacaggctatggatcttccacgacaaaccctttggtctag 879 0.0 MIPCSRPMTERRLRPPPEQALKCPRCESTHTKFCYYNNYSLSQPRYFCKTCRRYWTKGGTLRNIPVGGGCRKNKKVSTKKHNDQPAINQNQAHAGPSYVHNQKDLQLPFLDVQFSHLNNLLGTNVGALGNPNFMESKYNMGMLENPRPIDFMESRLDGGMNMIRNSSRSFELLENGDMSVGGGVGFGDMNGYSGLPLNYQGLSSQAFGAMSLDGSIGNVGTYIMDSCQRLMLPYDGGDNTLNGSIDVKPNPKLLSLEWQDQGSSDAEKLSLGYINGSGSWTGYGSSTTNPLV 292
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste6g02210 292 ProSitePatterns Zinc finger Dof-type signature. 23 59 IPR003851 GO:0003677|GO:0006355
Pste6g02210 292 Pfam Dof domain, zinc finger 19 75 IPR003851 GO:0003677|GO:0006355
Pste6g02210 292 ProSiteProfiles Zinc finger Dof-type profile. 21 75 IPR003851 GO:0003677|GO:0006355
Pste6g02210 292 MobiDBLite consensus disorder prediction 72 91 - -
Pste6g02210 292 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 11 112 IPR045174 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste6g02210 Pste-Chr6 10473377 10475362 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste6g02210 11 259 C2C2-Dof Transcription Factor Family AT5G62940 40.580 1.12e-48 164
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Pste6g02210 zf-Dof 2.4e-33 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste6g02210 6 10473377 10475362 Pste2g00799 2 8486133 8488212 PCT