Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste6g02200 ATGGCTGAAAGCACAACAATGGTGTTCACTCGCACTTGTGATGCAACTCGGCTCTTAGCATTGAACCTTAGGAATCTTGGTTTAAAAGCCATCCCTATTAATGGTCATATGAGTCAGTCAAAGAGACTTGGAGCCTTGAATAATTTCAAATCTGGAGAGTGCAATACTCTCCTTTGTACTGATGTAGCTAGTACAGGACTGGATATTCCGAAGGTAGATATGGTGATTAACTATGACATTCCTACAAACTCCAAACTACAGGATTATATACATCGGGTGGGAAGGACTGCTCGTGCTGGGCGCTCTGGCGTTTCTATTTCCCTAGTAAATCAGTATGAGCTTGAGTGGTACATTCAAATAGAGAAGCTTATAGGCAAGAAGCTACTTGAGTATCTCGCACAAGAAGAGGAAGTTCTGCTTTTGGAAGAGCGTGTAAGCAAGGCAAAAAGATTAGCCATCATGAAAATGAAGGAGACTGGAGGGAAGCAGAAACGGAGGGGCGAAGAAGATTATGATGGAGTGGATATCGACAAGTACTTGGGTCTCAGGGATGGAAAATCTTCCAAGAAGTTTAGAAGATGAGATCATGTCACTTTTGATGAGTGAATGTGGCAGTTGAATGAATCAAATGAAACCATGAAAATTGAGGATAGAGTGAGATGTCATGCAACTTCTGCTTTGTAGTCCAATTTTGAGCATTTTTTTATTAAATTAAAAAATGTTTCCCAATGAGTAATTATAAACAATTTCCTAGTTATGCTTTGGAAACTATTGTATCATAATTTTGTTTTCAATTGAC 799 0.3905 MAESTTMVFTRTCDATRLLALNLRNLGLKAIPINGHMSQSKRLGALNNFKSGECNTLLCTDVASTGLDIPKVDMVINYDIPTNSKLQDYIHRVGRTARAGRSGVSISLVNQYELEWYIQIEKLIGKKLLEYLAQEEEVLLLEERVSKAKRLAIMKMKETGGKQKRRGEEDYDGVDIDKYLGLRDGKSSKKFRR 193
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste6g02200 193 Gene3D - 2 177 IPR027417 -
Pste6g02200 193 SMART helicmild6 17 100 IPR001650 -
Pste6g02200 193 Pfam Helicase conserved C-terminal domain 4 100 IPR001650 -
Pste6g02200 193 CDD SF2_C_DEAD 6 109 - -
Pste6g02200 193 PANTHER RNA HELICASE 5 156 - -
Pste6g02200 193 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 5 132 IPR027417 -
Pste6g02200 193 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1 140 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste6g02200 Pste-Chr6 10433984 10435584 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste6g02200 4 130 Eukaryotic Initiation Factors Gene Family AT3G19760 33.858 2.13e-20 85.9