Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste6g02192 TCGCGTTGTTCTTGTTCACCAAATACAAATAAACACGGCAAAACGAACTCGGCGGTGCCGTTAGCCATGGAAGCAGCGACAGCAACCTCTTCTCAGAGAAAGCCGAAGAGAAAGCGAGCCTTGGCCAAAAGCGATCCTGAAGTCGAACGTCTCAACTCGCTTCCGTGGAACTCGGCACTTCCTCAAAACGACGACGATGACGCCTTCTCAATGTTCATTGGCTCCAACGAACTCGAAGGAGGTTTTCTTTCGCTCGAGGAGATTGATGAGGCTGAGTATGGTTTAAATATTCCTGAACCTGAAATTGACAAGAGGAAGAATAAGAAGAAGAAGTCCGAACAGCACGAAAACGTGAAAAAGCAGCAGCAGGATGAAGTTAATGGTGCTTCTAGTGACAAGGTTGAAGCAGAGTTGGATGGGGCTGTGAAGTCTAAAGAGAATAAAAAGAAGAAAAAGAAGAAGAAAAAGAAGGATGCTAGTGAAGATCAGAAAGTTGAGCAGTCAGATGCTGGTTTAGATACTAATGTGAAGGATGATATTGGGGAAGAGGATATTGATGAAGCTGAGTTTTATGCATGGAATGAGTTGAGGCTTCATCCGCTCCTAATGAAAGCAGTATGCAAACTTGGCTTCAAGGAACCAACGCCGATACAGAAGGCTTGCATTCCAGCTGCTGCTCATCAAGGGAAGGATGTTGTTGGGGCTGCTGAGACAGGATCTGGTAAAACACTTGCATTTGGTTTGCCTATTTTGCAACGGCTTTTGGAGGAGAGAGAGAAGGATGCAAAGGTGGTTGAAGAAAGGGGTGAAGAACCTGAAAAGTATGCTCCTACAGGCCTTTTGAGGGCTCTTATTATTGCTCCAACTAGAGAACTTGCTCTTCAGGTCACTGATCATCTGAAAGCAGTAGCCAAGTATATTAATGTTAGGGTGACCCCTATAGTTGGGGGAATTTTAGCAGAAAAGCAGGAGAGACTTTTAAAAGCAAAGCCTGAGATTGTTGTTGGGACTCCAGGAAGGTTATGGGAACTTATGTCAGCTGGAGAAAAACATCTAGTTGAGTTACATTCATTGTCTTTCTTTGTGCTTGATGAGGCTGATCGAATGGTACAAAGTGGTCATTTTAAGGAGTTGCAGTCAATAATTGATATGCTTCCTATGTCCAATATATCCATTGAAGATAATTCTCTACATGTACAAAGTTGCGTTACAGTTTCTAGTTACCAAAGAAAGAAAAGGCAAACTCTTGTTTTTTCAGCAACTGTTGCACTGTCTGCTGATTTTCGCAAGAAGCTAAAACGTGGTTCTGTTCAACAAAAGCATTCTTTGACAGATGGATTGAATTCTATCGAAACTCTTTCTGAGCGTGCCGGAATGAGATCCAATGCTGCAATTATTGATCTTACTAACCCATCTATATTAGCAGCTAAGCTTGAGGAGTCATTTATTGAATGCAAAGAAGAAGATAAAGATGCATATTTGTATTATATTTTGACTGTCCATGGACAAGGCTGCACAATAGTTTTTTGTACATCAATTGCAGCTTTACGCCATATTTCTTCCATACTGCGCATTCTTGGTGTCAATGCCGTTGATCGCTTTCGTGAAAATGAAAATGGCATACTTGTTGCTACAGATGTTGCTGCAAGGGGTCTTGATATCCCTGGTGTTAGAACTGTTGTCCACTATCAGCTTCCACATTCAGCAGATGTTTATGTTCATAGAAGTGGAAGAACAGCCAGAGCTTCTGCTGAAGGATGTAGTATTGCTTTAATATCACCAAGAGATACATCAAAGTTTGCTTCATTGTGCAAGTCGTTTTCTAAGGATAACTTTCAGCGGTTTCCTTTAGAGAACTCTTACATGCCAGAGGTCCTAAAACGACTGTCTCTTGCTCGGCAAATAGACAAGATAACAAGGAGGGATTCCCAGGAAAAGGCTGAGAAAAGCTGGTTTGATCGGAATGCTACCTCGGTGGAATTAGTTACGGAAAATTTTGACAGTGAAGAGGAACAAGTGAACAAACATAAGCAAAGGAAGGTCAGCTCTAGACAATTGAAGAAATTGCAGGAGGAGCTCAATATGCTGATTTCACGTCCATTACAATCAAAAACATTTTCGCATCGATATTTAGCAGGGGCTGGTGTCACACCCCTTATGCAGGAGCAATTGCAACAATTAGCAAGGCAAAAACTAAGTGATCACCAGGGTTCAGATCTAGGCAGAAAGGGAAAATTGGTTGTTATTGGTCAAGATTGTGTGGAAGCACTTCAGGCACTTCGAAGTGCTGGTGAAGAGGTGCGCATGGATGTCAAGGATTTGGCAGGAAAACACAGAAATATGGCAAATTTAAAAAGAAAGCGAAAAGAGGAGAAAAAACGCTTGCGTGATCAGCGAAGAAAGCAGAAGAAAAGGCTAAAACACGGGGATGAATAGAGTTTGTATACATAGCTGAGCCATTAGGAAAAATTTTGCACCAGCTAAAATTGTCACTAGTTGCAGAATTTTTTAAGGCAGCGTCTTGTAGTTTCTCCTCCCTAGTTTTGAATTTTGTTTGAAATATATATCTATATAATCCTTTATCGAGCAGTGATTGTGATCATGTGATTGAGTTTTTTATTAAATTATATCATAGGAAATACATTGTCATCTTTGATGGTTGTCACATAATAGTCATGCTTGAAGATTGCGGTGTTTCTAGATGCACATTGATCAGATTGCTGACGCAAGGACTCATTTGGATTTTCGG 2749 0.4114 SRCSCSPNTNKHGKTNSAVPLAMEAATATSSQRKPKRKRALAKSDPEVERLNSLPWNSALPQNDDDDAFSMFIGSNELEGGFLSLEEIDEAEYGLNIPEPEIDKRKNKKKKSEQHENVKKQQQDEVNGASSDKVEAELDGAVKSKENKKKKKKKKKKDASEDQKVEQSDAGLDTNVKDDIGEEDIDEAEFYAWNELRLHPLLMKAVCKLGFKEPTPIQKACIPAAAHQGKDVVGAAETGSGKTLAFGLPILQRLLEEREKDAKVVEERGEEPEKYAPTGLLRALIIAPTRELALQVTDHLKAVAKYINVRVTPIVGGILAEKQERLLKAKPEIVVGTPGRLWELMSAGEKHLVELHSLSFFVLDEADRMVQSGHFKELQSIIDMLPMSNISIEDNSLHVQSCVTVSSYQRKKRQTLVFSATVALSADFRKKLKRGSVQQKHSLTDGLNSIETLSERAGMRSNAAIIDLTNPSILAAKLEESFIECKEEDKDAYLYYILTVHGQGCTIVFCTSIAALRHISSILRILGVNAVDRFRENENGILVATDVAARGLDIPGVRTVVHYQLPHSADVYVHRSGRTARASAEGCSIALISPRDTSKFASLCKSFSKDNFQRFPLENSYMPEVLKRLSLARQIDKITRRDSQEKAEKSWFDRNATSVELVTENFDSEEEQVNKHKQRKVSSRQLKKLQEELNMLISRPLQSKTFSHRYLAGAGVTPLMQEQLQQLARQKLSDHQGSDLGRKGKLVVIGQDCVEALQALRSAGEEVRMDVKDLAGKHRNMANLKRKRKEEKKRLRDQRRKQKKRLKHGDE 811
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste6g02192 811 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 188 423 IPR027417 -
Pste6g02192 811 Gene3D - 141 438 IPR027417 -
Pste6g02192 811 Pfam Helicase conserved C-terminal domain 489 582 IPR001650 -
Pste6g02192 811 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 362 370 IPR000629 -
Pste6g02192 811 Coils Coil 774 805 - -
Pste6g02192 811 SMART helicmild6 498 583 IPR001650 -
Pste6g02192 811 MobiDBLite consensus disorder prediction 130 145 - -
Pste6g02192 811 MobiDBLite consensus disorder prediction 92 178 - -
Pste6g02192 811 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 229 614 IPR027417 -
Pste6g02192 811 SMART ultradead3 210 450 IPR014001 -
Pste6g02192 811 MobiDBLite consensus disorder prediction 781 803 - -
Pste6g02192 811 Coils Coil 659 699 - -
Pste6g02192 811 MobiDBLite consensus disorder prediction 1 72 - -
Pste6g02192 811 CDD DEADc_DDX24 202 467 - -
Pste6g02192 811 Coils Coil 105 125 - -
Pste6g02192 811 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 223 440 IPR014001 -
Pste6g02192 811 Pfam DEAD/DEAH box helicase 215 423 IPR011545 GO:0003676|GO:0005524
Pste6g02192 811 Coils Coil 142 163 - -
Pste6g02192 811 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 477 623 IPR001650 -
Pste6g02192 811 Gene3D - 474 702 IPR027417 -
Pste6g02192 811 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 191 219 IPR014014 GO:0003724
Pste6g02192 811 PANTHER RNA HELICASE 123 755 - -
Pste6g02192 811 MobiDBLite consensus disorder prediction 158 178 - -
Pste6g02192 811 MobiDBLite consensus disorder prediction 781 811 - -
Pste6g02192 811 MobiDBLite consensus disorder prediction 97 122 - -
Pste6g02192 811 CDD SF2_C_DEAD 478 592 - -
Pste6g02192 811 MobiDBLite consensus disorder prediction 1 30 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste6g02192 Pste-Chr6 10390410 10407791 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste6g02192 192 623 Eukaryotic Initiation Factors Gene Family AT5G11200 26.539 6.56e-35 137
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste6g02192 6 10390410 10407791 Pste6g02192 6 10390410 10407791 ECH