Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste6g02172 atggacattgaaacaaacctcacacaaaactatgattcacagccaatgcatttgcaagaaaactacctgaaacccagcatggaagatcagcttccttttggagctccttcctcgcagggtttcttgcaagattttcatcatattgatcatcactttcatgtgaataatggctcctcatccaatcccattttcgtggtacaaactccaaattttgaaccctttgatcacagtgtaacatgtgagtctgcacctcctgattttgaagtttatgagtgcaagcctttttttgagagtaacagtagtagcaatgctcatcttatggacaatttccaatatgtaggttatactttgaacctccctcgggccaatcaacccgatatgatggtcacaaaccaaagctatatgccctttaacactctagaaaccaagcctttgaattttgttgtaccagatgaagtctcatgcatatcccctccaaattactataagagagttggcttgaataaaaacaccagtgaatctccaagctcaaggagaacattaaaatctcggaagaagtccaacgtagtgaaggggcaatggacttcagatgaagacagattgttgattcaactggtcgagcaatatggagtgaggaagtggtcacatatagctcaggcgttgccaggaagaatagggaaacaatgcagagaacgatggcataaccatttaaggcccgacattaagaaggacatatggactgaagaagaggacaagatactgatacaaagtcatgcagagataggaaataagtgggcagagattgcaaaaaaattgccaggaagaactgagaactcgataaaaaaccattggaacgcaaccaagagaaggcaatattccaaaagaaagtgtcggtcaaagtaccctagaggctctcttcttcaggaatacatcaagagcttggacttagacaaaaatccaccaatagactatcgaaaaaaatctgctaaaaatggcaatggcaagacaaacagtaacagcaaattagcagcagctcaggtgcagtgtgcagatcaattttgtctcaacggccagttggtgccaaaatatgattttaacgaggtcccagatttttgtttggatgagaacttgtttgaagaggggtgtagcattgattctctgctagatgatatgcaaagtgcttctaccatggatgagaaagatttttatggaaaagtgcaatgtgctcctactatggcgggaaaagaatcttttgagggtggcatgcagtgttgtcatgttgatgggcatcatgatcatgagattgagatgatgccctcctcaaccacggggatggaagttaagaaggagctagatttggtggagatgatgtcccacattaatgaaagtcatcatcgtacgctctcacctcgttga 1416 0.0 MDIETNLTQNYDSQPMHLQENYLKPSMEDQLPFGAPSSQGFLQDFHHIDHHFHVNNGSSSNPIFVVQTPNFEPFDHSVTCESAPPDFEVYECKPFFESNSSSNAHLMDNFQYVGYTLNLPRANQPDMMVTNQSYMPFNTLETKPLNFVVPDEVSCISPPNYYKRVGLNKNTSESPSSRRTLKSRKKSNVVKGQWTSDEDRLLIQLVEQYGVRKWSHIAQALPGRIGKQCRERWHNHLRPDIKKDIWTEEEDKILIQSHAEIGNKWAEIAKKLPGRTENSIKNHWNATKRRQYSKRKCRSKYPRGSLLQEYIKSLDLDKNPPIDYRKKSAKNGNGKTNSNSKLAAAQVQCADQFCLNGQLVPKYDFNEVPDFCLDENLFEEGCSIDSLLDDMQSASTMDEKDFYGKVQCAPTMAGKESFEGGMQCCHVDGHHDHEIEMMPSSTTGMEVKKELDLVEMMSHINESHHRTLSPR 471
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste6g02172 471 CDD SANT 194 237 IPR001005 -
Pste6g02172 471 FunFam Transcriptional activator Myb isoform A 190 243 - -
Pste6g02172 471 Pfam Myb-like DNA-binding domain 191 237 IPR001005 -
Pste6g02172 471 Pfam Myb-like DNA-binding domain 246 285 IPR001005 -
Pste6g02172 471 PANTHER MYB PROTEIN-RELATED 171 333 - -
Pste6g02172 471 SUPERFAMILY Homeodomain-like 188 284 IPR009057 -
Pste6g02172 471 MobiDBLite consensus disorder prediction 166 188 - -
Pste6g02172 471 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 242 292 IPR017930 -
Pste6g02172 471 Gene3D - 190 243 - -
Pste6g02172 471 Gene3D - 245 306 - -
Pste6g02172 471 ProSiteProfiles Myb-like domain profile. 238 288 IPR001005 -
Pste6g02172 471 CDD SANT 246 288 IPR001005 -
Pste6g02172 471 ProSiteProfiles Myb-like domain profile. 186 237 IPR001005 -
Pste6g02172 471 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 186 241 IPR017930 -
Pste6g02172 471 FunFam Transcription factor MYB119 244 308 - -
Pste6g02172 471 SMART sant 242 290 IPR001005 -
Pste6g02172 471 SMART sant 190 239 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste6g02172 Pste-Chr6 10290646 10292911 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste6g02172 62 391 MYB Transcription Factor Family AT4G18770 48.753 1.00e-96 296
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pste6g02172 Myb_DNA-binding 6.9e-17 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste6g02172 6 10290646 10292911 Pste6g02172 6 10290646 10292911 ECH
Pste2g00775 2 8221670 8222895 Pste6g02172 6 10290646 10292911 PCT