Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste6g02169 CCTTGGACACCATAATATCATCTTGCCCCATCAAAGAACCTGCAACACTAAGCTCAAATAACAACATGTTCACACTGGGATTCTTCAGCCCTCAAAATTCCACAAACCGTTATTTTGGAATCTGGTACATGTCTAAATCCGCTGTTGTATGGGTTGCTAATAGAAACAAACCTTTAAAAGATTCTTCTGGGGTTGTCACAATATCAGAGAATGGAAATCTTGTGCTACTAAATGCACTGAAAGATATTGCTTGGTCAACAAATGTGTCTTTGCAAAATGCGAGTGCTAGACTCTTGTATTCTGGAAACCTTGTACTGCTAGACAATGCTACTGGAAAGACAGTGTGGGAGAGTTTCCAACATCCTTGTGACACAGCAATTCCAACTTTGAAAGTAAGTAAGAATGTGAGAACAGTTGAGGAAGTGAGGATCACATCATGGAAAAGCCTCTCTGATCCATCATATGGAAGTTTTTCTCTTGGTTTGGAAAATGGTTATGTTACTGAATTGTTTATTTGGAATGGCACACGACCCTTTTGGAGGAGTGGCCCTTGGAATGGCCATGTCTTCATTGGGACACCAAACATGATAAGTTCGTTCAGGGATGGTGTTAGTTTGGAAGAAATAGATGGAACTTTTTATTATTCTTATGATTATGCAAACAAGTCCTTCTTGAGAATCTATGTTTTGAACTCTCAAGGCCTGTTAGAGAGAAGGCAATGGGACTATGGTAACAAGGAGTGGAAATTGAAGGGGGCAATTCAAGAATCTGTTTGTGATGTTTATGGGATGTGTGGCCCGTTTGGACTGTGCAACTCTAAGAGTTCACCAATATGCTCTTGCTTGAGAGGTTTTGAACCAAGGAACAAGGATGGGAAGCAAGATAGGTTTCTGAAGCTGCAGATGGCTAAAGTGCCAGACCTTGCAGGAAGGTCACCTTTTAAGGACGGTTCAACTTCAGGTGTTGGAGACTGTAGAACTCTATGCCTCAGTAACTGCTTTTGTATAGCTTTTGCATATGATTCTGGTGTTGGATGTATGCTTTGGAGTACCGAGTTGCATGACATTCAAACATTCTCTAATGGAGGAGTTGATCTCTTCATACGTTTAGCCTACTCAGAATTGGATGAAGACAGCAGCAACAGAACAATCATTACAGTTACAACGGCTATAAGTGGAATAATTCTCATAATTACCTCTGCCTATATTCTATGGAGAAGGATTGCTAAGCAAGCAGAAAATAAGATTGGTGAGGGTGGTTTTGGTCCAGTATACAAGGTAATTTTGACCTGTCAGAGTTCATCAAGCTTCAAACCACAGGCATCTCAAGTTCTGTTATTTGATTTCCAGGGAAGGTTAGAAAATGAACAGGAAATAGCAGTTAAAAGACTTTCAAGGGCTTCCGGGCAGGGGATACAAGAATTTTTAAATGAAGTGGAGGTTATTTCCGAGCTTCAACACAGGAATTTAGTTAGACTTCTTGGATGCTGCATTGAAGCAGAAGAAAAAATGTTGGTCTATGAATACTTGCCAAACAAAAGTTTGGATTCTTATATCTTCGATCCATTGAAACAAACTTTCCTAGATTGGGAAAAGCGGTATATCATAATTGAAGGAATTGCTCGAGGGGTACTTTATCTTCATAGGGATTCTAAATTGAATCCAAAAATTTCAGATTTTGGTATGGCTAAAATATTCGGAGACAGTGAAATGAGGGGCAAAACCCAAAGAATTGTTGCAACGTACGGCTACATTTCTCCAGAATATGCTATGCAGGTCATTTCTATGCTTCATAGTGAGATTGTGGATATTCCTCCTCCAAAGCAACCGGCATTCATTCATAGTCAGACATTGTCAGGAACTCTAATGCCAAGTCAAAAGGATGTTGAGTTGTTCTGTATTAATAATGTGTCATTATCAGATTTTGAAGGTAGA 1934 0.3956 MFTLGFFSPQNSTNRYFGIWYMSKSAVVWVANRNKPLKDSSGVVTISENGNLVLLNALKDIAWSTNVSLQNASARLLYSGNLVLLDNATGKTVWESFQHPCDTAIPTLKVSKNVRTVEEVRITSWKSLSDPSYGSFSLGLENGYVTELFIWNGTRPFWRSGPWNGHVFIGTPNMISSFRDGVSLEEIDGTFYYSYDYANKSFLRIYVLNSQGLLERRQWDYGNKEWKLKGAIQESVCDVYGMCGPFGLCNSKSSPICSCLRGFEPRNKDGKQDRFLKLQMAKVPDLAGRSPFKDGSTSGVGDCRTLCLSNCFCIAFAYDSGVGCMLWSTELHDIQTFSNGGVDLFIRLAYSELDEDSSNRTIITVTTAISGIILIITSAYILWRRIAKQAENKIGEGGFGPVYKVILTCQSSSSFKPQASQVLLFDFQGRLENEQEIAVKRLSRASGQGIQEFLNEVEVISELQHRNLVRLLGCCIEAEEKMLVYEYLPNKSLDSYIFDPLKQTFLDWEKRYIIIEGIARGVLYLHRDSKLNPKISDFGMAKIFGDSEMRGKTQRIVATYGYISPEYAMQVISMLHSEIVDIPPPKQPAFIHSQTLSGTLMPSQKDVELFCINNVSLSDFEGR 623
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste6g02169 623 SMART blect_4 1 100 IPR001480 -
Pste6g02169 623 Pfam S-locus glycoprotein domain 158 266 IPR000858 GO:0048544
Pste6g02169 623 Pfam D-mannose binding lectin 27 126 IPR001480 -
Pste6g02169 623 ProSiteProfiles Bulb-type lectin domain profile. 1 97 IPR001480 -
Pste6g02169 623 SMART ntp_6 270 348 IPR003609 -
Pste6g02169 623 SUPERFAMILY Protein kinase-like (PK-like) 379 578 IPR011009 -
Pste6g02169 623 CDD B_lectin 2 100 IPR001480 -
Pste6g02169 623 SUPERFAMILY alpha-D-mannose-specific plant lectins 17 165 IPR036426 -
Pste6g02169 623 ProSiteProfiles PAN/Apple domain profile. 259 349 IPR003609 -
Pste6g02169 623 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 1 578 - -
Pste6g02169 623 Gene3D - 1 98 IPR036426 -
Pste6g02169 623 Pfam Protein tyrosine and serine/threonine kinase 391 570 IPR001245 GO:0004672|GO:0006468
Pste6g02169 623 CDD PAN_AP_plant 268 349 - -
Pste6g02169 623 Pfam PAN-like domain 271 334 IPR003609 -
Pste6g02169 623 ProSiteProfiles Protein kinase domain profile. 388 623 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pste6g02169 623 Gene3D Phosphorylase Kinase; domain 1 388 487 - -
Pste6g02169 623 FunFam Cysteine-rich receptor-like protein kinase 11 410 487 - -
Pste6g02169 623 Gene3D Transferase(Phosphotransferase) domain 1 488 582 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste6g02169 Pste-Chr6 10282295 10285274 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste6g02169 392 579 Receptor kinase-like Gene Family AT4G23190 49.029 2.12e-56 199
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Pste6g02169 PK_Tyr_Ser-Thr 1.4e-17 CL0016